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Gene/Protein Characteristic Table for FLJ00146

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Product ID	ORK06048
Accession No	AK074075
Clone name	sh05065
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5493 bp) Predicted protein sequence (522 aa)
Source	Human spleen

Length: 5493 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 522 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR003962	90	99	PR00014	Fibronectin
	IPR003962	300	310	PR00014	Fibronectin
	IPR003962	322	340	PR00014	Fibronectin
	IPR003962	340	354	PR00014	Fibronectin
	IPR001438	444	455	PR00010	Type II EGF-like signature
	IPR001438	456	463	PR00010	Type II EGF-like signature
	IPR001438	464	474	PR00010	Type II EGF-like signature
	IPR001438	475	481	PR00010	Type II EGF-like signature
HMMPfam	IPR006209	3	34	PF00008	EGF-like domain
	IPR006209	41	72	PF00008	EGF-like domain
	IPR003961	76	157	PF00041	Fibronectin
	IPR003961	175	258	PF00041	Fibronectin
	IPR003961	274	356	PF00041	Fibronectin
	IPR006209	448	479	PF00008	EGF-like domain
HMMSmart	IPR001881	1	35	SM00179	EGF-like calcium-binding
	IPR006210	2	35	SM00181	Type I EGF
	IPR001881	39	73	SM00179	EGF-like calcium-binding
	IPR006210	40	73	SM00181	Type I EGF
	IPR003961	76	161	SM00060	Fibronectin
	IPR003961	175	257	SM00060	Fibronectin
	IPR003961	274	355	SM00060	Fibronectin
	IPR006210	447	480	SM00181	Type I EGF
	IPR001881	448	480	SM00179	EGF-like calcium-binding
ProfileScan	IPR000742	3	34	PS50026	EGF-like domain
	IPR000742	448	479	PS50026	EGF-like domain
ScanRegExp	IPR006209	23	34	PS00022	EGF-like domain
	IPR006209	61	72	PS00022	EGF-like domain
	IPR006209	61	72	PS01186	EGF-like domain
	IPR006209	468	479	PS00022	EGF-like domain
	IPR006209	468	483	PS01186	EGF-like domain

Experimental conditions

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