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Gene/Protein Characteristic Table for FLJ00333

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Product ID	ORK05166
Accession No	AK090423
Clone name	sj04245
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4326 bp) Predicted protein sequence (437 aa)
Source	Human spleen
Rouge ID	mFLJ00333 by Kazusa Mouse cDNA Project

Length: 4326 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 437 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR007110	40	96	PF00047	Immunoglobulin-like
	IPR007110	133	189	PF00047	Immunoglobulin-like
	IPR007110	226	281	PF00047	Immunoglobulin-like
HMMSmart	IPR003599	32	113	SM00409	Immunoglobulin subtype
	IPR003598	38	101	SM00408	Immunoglobulin C-2 type
	IPR003599	125	206	SM00409	Immunoglobulin subtype
	IPR003598	131	194	SM00408	Immunoglobulin C-2 type
	IPR003599	218	298	SM00409	Immunoglobulin subtype
	IPR003598	224	286	SM00408	Immunoglobulin C-2 type
ProfileScan	IPR007110	26	111	PS50835	Immunoglobulin-like
	IPR007110	119	206	PS50835	Immunoglobulin-like
	IPR007110	212	294	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	310	TGVAGGLLSIAGLAAGALLLYCW	332	PRIMARY	23

Experimental conditions

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