FLJ00206

Product ID	ORK05116
Accession No	AK074133
Clone name	sj04644
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4121 bp) Predicted protein sequence (702 aa)
Source	Human spleen

	N-terminal truncation	Coding interruption
cloned DNA seq	Warning	Warning

Length: 702 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAB84959	100.0	FLJ00206 protei...	Homo sapiens
AAO59377	99.5	NOD27 [Homo sap...	Homo sapiens
Q86WI3	99.5	Protein NLRC5; ...	Homo sapiens
AAI56513	99.5	NLR family, CAR...	synthetic construct
EAW82899	96.9	nucleotide-bind...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AK090439	9.3e-165	97.7	FLJ00359

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001611	23	36	PR00019	Leucine-rich repeat
FPrintScan	IPR001611	182	195	PR00019	Leucine-rich repeat
HMMSmart	IPR003590	20	47	SM00368	Leucine-rich repeat
	IPR003590	52	75	SM00368	Leucine-rich repeat
	IPR003590	152	181	SM00368	Leucine-rich repeat
	IPR003590	182	209	SM00368	Leucine-rich repeat
	IPR003590	256	284	SM00368	Leucine-rich repeat
	IPR003590	393	420	SM00368	Leucine-rich repeat
	IPR003590	427	448	SM00368	Leucine-rich repeat
ProfileScan	IPR007091	1	84	PS50503	Leucine-rich repeat
ProfileScan	NULL	112	446	PS50319	NULL

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	60	GLSVAGVHCVLRAVSACWTLAEL	82	PRIMARY	23

Primer_f
Primer_r
PCR conditions	test