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Gene/Protein Characteristic Table for FLJ00236

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Product ID	ORK06673
Accession No	AK074163
Clone name	sj07289
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4694 bp) Predicted protein sequence (702 aa)
Source	Human spleen
Rouge ID	mFLJ00236 by Kazusa Mouse cDNA Project

Length: 4694 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 702 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR003962	251	260	PR00014	Fibronectin
	IPR003962	266	276	PR00014	Fibronectin
	IPR003962	306	320	PR00014	Fibronectin
HMMPfam	IPR007110	41	99	PF00047	Immunoglobulin-like
	IPR003961	142	225	PF00041	Fibronectin
	IPR003961	237	322	PF00041	Fibronectin
HMMSmart	IPR003599	33	116	SM00409	Immunoglobulin subtype
	IPR003598	39	104	SM00408	Immunoglobulin C-2 type
	IPR003961	142	222	SM00060	Fibronectin
	IPR003961	237	319	SM00060	Fibronectin
ProfileScan	IPR007110	16	114	PS50835	Immunoglobulin-like
	IPR000694	605	662	PS50099	Proline-rich region
	NULL	645	674	PS50324	NULL

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	7	SLLGGRGSLPLLLLLIMVLRED	28	SECONDARY	22
	2	358	PEVIATCGVALWLLLLGTAVCIH	380	PRIMARY	23

Experimental conditions

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