HUGE

Gene/Protein Characteristic Table for KIAA0088

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00404
Accession No. :	D42041
Description :	Neutral alpha-glucosidase AB precursor.
HUGO Gene Name :	glucosidase, alpha; neutral AB (GANAB)
Clone Name :	ha01225 [Vector Info]
Flexi ORF Clone :	pF1KSDA0088
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 3820 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 987 bp

Genome contig ID gi51511727r_62048876
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TCAAAGGAGAAACAATAAAGGGATAAACCATAAAT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACTGGTGGTAGTCTGGATTCTAGTTCTAGCCTGAGCCACAGACCCTAGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 r 62148876 62170645 24 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 943 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAA04006	100.0	Glucosidase II ...	Homo sapiens
Q14697	99.9	Neutral alpha-g...	Homo sapiens
EAW74050	99.7	glucosidase, al...	Homo sapiens
XP_001154003	99.5	alpha glucosida...	Pan troglodytes
BAG58692	99.7	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB032987	2.6e-09	26.0	KIAA1161

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000322 364 809 PF01055 Glycoside hydrolase

ScanRegExp IPR000322 537 544 PS00129 Glycoside hydrolase

IPR000322 644 674 PS00707 Glycoside hydrolase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000322	364	809	PF01055	Glycoside hydrolase
ScanRegExp	IPR000322	537	544	PS00129	Glycoside hydrolase
IPR000322	644	674	PS00707	Glycoside hydrolase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 15 ASLVLAFLGVCLGITLAVDRS 35 PRIMARY 21

2 625 LKISIPMCLSLGLVGLSFCGADV 647 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	15	ASLVLAFLGVCLGITLAVDRS	35	PRIMARY	21
2	625	LKISIPMCLSLGLVGLSFCGADV	647	PRIMARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: TTACTCCCCTTTTTATGCCCC
Primer_r	: ACAAGAAGGGGGCAAAAGAAG
PCR product length	: 251 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	987 bp
Genome contig ID	gi51511727r_62048876
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- TCAAAGGAGAAACAATAAAGGGATAAACCATAAAT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACTGGTGGTAGTCTGGATTCTAGTTCTAGCCTGAGCCACAGACCCTAGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	r	62148876	62170645	24	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA0088

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information