HUGE

Gene/Protein Characteristic Table for KIAA0548

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04232
Accession No. :	AB011120
Description :	Attractin precursor.
HUGO Gene Name :
Clone Name :	hh00769 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5632 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the protein sequence	Description

Length: 452 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
EAX10531	4e-194	100.0	attractin, isof...	Homo sapiens
O75882	4.2e-194	100.0	Attractin; Maho...	Homo sapiens
XP_001115192	7.4e-194	99.8	attractin [Maca...	Macaca mulatta
AAF72881	8.6e-194	99.8	membrane attrac...	Homo sapiens
AAM95445	2.1e-192	98.7	attractin [Bos ...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB011106	5.4e-110	68.0	KIAA0534
AB011542	7.1e-08	30.5	KIAA0818
AB058676	1.8e-05	26.0	KIAA1780
AB011541	3.3e-05	31.6	KIAA0817
AB011539	3.7e-05	26.6	KIAA0815

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR002165 9 84 PF01437 Plexin

IPR002049 86 129 PF00053 EGF-like

IPR002049 132 178 PF00053 EGF-like

HMMSmart IPR003659 9 84 SM00423 Plexin/semaphorin/integrin

IPR002049 86 129 SM00180 EGF-like

IPR002049 132 178 SM00180 EGF-like

ProfileScan IPR002049 86 131 PS50027 EGF-like

IPR002049 132 180 PS50027 EGF-like

ScanRegExp IPR002049 100 134 PS01248 EGF-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002165	9	84	PF01437	Plexin
IPR002049	86	129	PF00053	EGF-like
IPR002049	132	178	PF00053	EGF-like
HMMSmart	IPR003659	9	84	SM00423	Plexin/semaphorin/integrin
IPR002049	86	129	SM00180	EGF-like
IPR002049	132	178	SM00180	EGF-like
ProfileScan	IPR002049	86	131	PS50027	EGF-like
IPR002049	132	180	PS50027	EGF-like
ScanRegExp	IPR002049	100	134	PS01248	EGF-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 273 NITFFVYVSNFTWPIKIQIAFSQ 295 SECONDARY 23

2 301 DLVQFFVTFFSCFLSLLLVAAVV 323 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	273	NITFFVYVSNFTWPIKIQIAFSQ	295	SECONDARY	23
2	301	DLVQFFVTFFSCFLSLLLVAAVV	323	PRIMARY	23

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: AAATGCACAGACCTCCCTTAG

Primer_r
: ATTTCATTGCGGGGATTGTGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AAATGCACAGACCTCCCTTAG
Primer_r	: ATTTCATTGCGGGGATTGTGG
PCR product length	: 126 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA0548

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information