HUGE

Gene/Protein Characteristic Table for KIAA0549

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07194
Accession No. :	AB011121
Description :	Trafficking kinesin-binding protein 2.
HUGO Gene Name :	trafficking protein, kinesin binding 2 (TRAK2)
Clone Name :	hh00779 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 4745 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the protein sequence	Description

Length: 469 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
AAY24227	6.3e-166	100.0	unknown [Homo s...	Homo sapiens
O60296	6.5e-166	100.0	Trafficking kin...	Homo sapiens
BAB32501	6.5e-166	100.0	amyotrophic lat...	Homo sapiens
BAB32550	1.4e-165	99.8	amyotrophic lat...	Homo sapiens
AAH40668	2.8e-164	99.4	Trafficking pro...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB028965	7.8e-19	46.6	KIAA1042

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: CTCCACATGCAACCCAACAGC

Primer_r
: AGATAGGGGCACAAAGAGCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTCCACATGCAACCCAACAGC
Primer_r	: AGATAGGGGCACAAAGAGCTG
PCR product length	: 165 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA0549

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information