HUGE

Gene/Protein Characteristic Table for KIAA0810

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07289
Accession No. :	AB018353
Description :	Sad1/unc-84 protein-like 1.
HUGO Gene Name :	unc-84 homolog A (C. elegans) (UNC84A)
Clone Name :	hk05647s1 [Vector Info]
Flexi ORF Clone :	pF1KA0810
Source :	Human adult brain
Note :	We replaced hk05647, former representative clones for KIAA0810 with hk05647s1. (2002/12/27)

Features of the cloned DNA sequence	Description

Length: 4047 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1571 bp

Genome contig ID gi89161213f_738664
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
GAGGTTTAAATAAAGAGTTTTAATTTTTAAAAGGG
Flanking genome sequence
(142403 - 142452)
----+----*----+----*----+----*----+----*----+----*
CATGGGATATAAACAGTCTATTTCTTTTCTCAGTTTGTCTGTTTCTGCCC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 7 f 838657 881065 21 99.7 Terminal No-hit

Features of the protein sequence	Description

Length: 824 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAI52419	100.0	UNC84A protein ...	Homo sapiens
O94901	99.8	Protein unc-84 ...	Homo sapiens
XP_001144264	98.2	unc-84 homolog ...	Pan troglodytes
EAW87177	88.5	unc-84 homolog ...	Homo sapiens
EAL23707	88.6	unc-84 homolog ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB014568	3.4e-44	34.6	KIAA0668

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR012919 687 822 PF07738 Sad1/UNC-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012919	687	822	PF07738	Sad1/UNC-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 252 WHIWACAGYFLLQILRRIGAVGQ 274 SECONDARY 23

2 282 SALWLAVVAPGKAASGVFWWLGI 304 PRIMARY 23

3 317 NVFLLTRCLRNICKFLVLLIPLF 339 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	252	WHIWACAGYFLLQILRRIGAVGQ	274	SECONDARY	23
2	282	SALWLAVVAPGKAASGVFWWLGI	304	PRIMARY	23
3	317	NVFLLTRCLRNICKFLVLLIPLF	339	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GCAGCAGAAGCACTACCAAAG

Primer_r
: ACTGATTTGGGATTTGGGGTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 7

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GCAGCAGAAGCACTACCAAAG
Primer_r	: ACTGATTTGGGATTTGGGGTG
PCR product length	: 130 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1571 bp
Genome contig ID	gi89161213f_738664
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- GAGGTTTAAATAAAGAGTTTTAATTTTTAAAAGGG
Flanking genome sequence (142403 - 142452)	----+--------+--------+--------+--------+----* CATGGGATATAAACAGTCTATTTCTTTTCTCAGTTTGTCTGTTTCTGCCC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	7	f	838657	881065	21	99.7	Terminal No-hit

Gene/Protein Characteristic Table for KIAA0810

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information