HUGE

Gene/Protein Characteristic Table for KIAA1085

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04876
Accession No. :	AB029008
Description :	Eukaryotic translation initiation factor 4E-binding protein 3.
HUGO Gene Name :	ankyrin repeat and KH domain containing 1 (ANKHD1)
Clone Name :	hj07690 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5455 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3699 bp

Genome contig ID gi51511721f_139788595
PolyA signal sequence
(AGTAAA,-20)
+----*----+----*----+----*----+----
ACCTTCTGACTGCTTAGTAAACATTCAAAGAAATG
Flanking genome sequence
(120754 - 120803)
----+----*----+----*----+----*----+----*----+----*
CCTTGGCTCCAGTGTTCTCCTCAATGCTGATTTTCTCATCTCAGCCACAC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 5 f 139888595 139909347 7 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 584 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
CAB66877	4.8e-177	99.5	hypothetical pr...	Homo sapiens
EAW62060	5.3e-177	99.7	hCG1982388, iso...	Homo sapiens
XP_856763	9.7e-169	94.9	similar to mult...	Canis lupus fam...
XP_856682	9.7e-169	94.9	similar to mult...	Canis lupus fam...
XP_856640	1e-168	94.9	similar to mult...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB014597	2.7e-24	36.2	KIAA0697

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCATCTACGACCGAAAGTTCC

Primer_r
: AATTGTGCGTCATCGGGTATC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 5

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	3699 bp
Genome contig ID	gi51511721f_139788595
PolyA signal sequence (AGTAAA,-20)	+--------+--------+----*----+---- ACCTTCTGACTGCTTAGTAAACATTCAAAGAAATG
Flanking genome sequence (120754 - 120803)	----+--------+--------+--------+--------+----* CCTTGGCTCCAGTGTTCTCCTCAATGCTGATTTTCTCATCTCAGCCACAC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	5	f	139888595	139909347	7	99.4	Perfect prediction

Primer_f	: TCATCTACGACCGAAAGTTCC
Primer_r	: AATTGTGCGTCATCGGGTATC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1085

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information