HUGE

Gene/Protein Characteristic Table for KIAA0697

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04107
Accession No. :	AB014597
Description :	ankyrin repeat domain protein 17 isoform b.
HUGO Gene Name :	ankyrin repeat domain 17 (ANKRD17)
Clone Name :	hk04486s1 [Vector Info]
Source :	Human adult brain
Note :	We replaced hk04486, former representative clones for KIAA0697 with hk04486s1. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 8456 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 993 bp

Genome contig ID gi89161207r_74059819
PolyA signal sequence
(ATTAAA,-20)
+----*----+----*----+----*----+----
CTTAATATTCTGTTTATTAAATAATTCAATGTACT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTTTATATTGGATGATATTGATTCTTAACATTGGCTTTTCAGTCATCAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 4 r 74159819 74342903 34 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 2486 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAX05658	100.0	ankyrin repeat ...	Homo sapiens
O75179	99.9	Ankyrin repeat ...	Homo sapiens
XP_001157805	99.9	ankyrin repeat ...	Pan troglodytes
XP_001157909	99.8	ankyrin repeat ...	Pan troglodytes
XP_001157588	99.5	ankyrin repeat ...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB029008	1.2e-19	36.6	KIAA1085
AB033076	9.3e-09	32.4	KIAA1250
AB033049	1.1e-07	32.7	KIAA1223
AB002377	3.9e-06	26.6	KIAA0379
AB023174	0.0006	27.9	KIAA0957

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR002110 999 1011 PR01415 Ankyrin

IPR002110 1011 1023 PR01415 Ankyrin

HMMPfam IPR002110 125 149 PF00023 Ankyrin

IPR002110 150 182 PF00023 Ankyrin

IPR002110 184 216 PF00023 Ankyrin

IPR002110 217 249 PF00023 Ankyrin

IPR002110 250 282 PF00023 Ankyrin

IPR002110 284 316 PF00023 Ankyrin

IPR002110 317 349 PF00023 Ankyrin

IPR002110 350 382 PF00023 Ankyrin

IPR002110 383 415 PF00023 Ankyrin

IPR002110 417 449 PF00023 Ankyrin

IPR002110 450 479 PF00023 Ankyrin

IPR002110 480 512 PF00023 Ankyrin

IPR002110 513 545 PF00023 Ankyrin

IPR002110 547 579 PF00023 Ankyrin

IPR002110 580 607 PF00023 Ankyrin

IPR000432 688 705 PF00488 DNA mismatch repair protein MutS

IPR002110 965 997 PF00023 Ankyrin

IPR002110 998 1030 PF00023 Ankyrin

IPR002110 1032 1064 PF00023 Ankyrin

IPR002110 1065 1097 PF00023 Ankyrin

IPR002110 1100 1132 PF00023 Ankyrin

IPR002110 1134 1166 PF00023 Ankyrin

IPR002110 1167 1199 PF00023 Ankyrin

IPR002110 1202 1234 PF00023 Ankyrin

IPR002110 1235 1267 PF00023 Ankyrin

IPR002110 1268 1290 PF00023 Ankyrin

IPR004088 1610 1672 PF00013 K Homology

HMMSmart IPR002110 117 146 SM00248 Ankyrin

IPR002110 150 179 SM00248 Ankyrin

IPR002110 184 213 SM00248 Ankyrin

IPR002110 217 246 SM00248 Ankyrin

IPR002110 250 279 SM00248 Ankyrin

IPR002110 284 313 SM00248 Ankyrin

IPR002110 317 346 SM00248 Ankyrin

IPR002110 350 379 SM00248 Ankyrin

IPR002110 383 412 SM00248 Ankyrin

IPR002110 417 446 SM00248 Ankyrin

IPR002110 447 476 SM00248 Ankyrin

IPR002110 480 509 SM00248 Ankyrin

IPR002110 513 542 SM00248 Ankyrin

IPR002110 547 576 SM00248 Ankyrin

IPR002110 580 609 SM00248 Ankyrin

IPR002110 965 994 SM00248 Ankyrin

IPR002110 998 1027 SM00248 Ankyrin

IPR002110 1032 1061 SM00248 Ankyrin

IPR002110 1065 1094 SM00248 Ankyrin

IPR002110 1100 1129 SM00248 Ankyrin

IPR002110 1134 1163 SM00248 Ankyrin

IPR002110 1167 1196 SM00248 Ankyrin

IPR002110 1202 1231 SM00248 Ankyrin

IPR002110 1235 1264 SM00248 Ankyrin

IPR002110 1268 1297 SM00248 Ankyrin

IPR004087 1607 1677 SM00322 K Homology

ProfileScan IPR002110 117 1290 PS50297 Ankyrin

IPR002110 184 216 PS50088 Ankyrin

IPR002110 217 249 PS50088 Ankyrin

IPR002110 250 282 PS50088 Ankyrin

IPR002110 284 316 PS50088 Ankyrin

IPR002110 317 349 PS50088 Ankyrin

IPR002110 350 382 PS50088 Ankyrin

IPR002110 383 415 PS50088 Ankyrin

IPR002110 447 479 PS50088 Ankyrin

IPR002110 480 512 PS50088 Ankyrin

IPR002110 513 545 PS50088 Ankyrin

IPR002110 547 579 PS50088 Ankyrin

IPR002110 965 997 PS50088 Ankyrin

IPR002110 998 1030 PS50088 Ankyrin

IPR002110 1032 1064 PS50088 Ankyrin

IPR002110 1065 1097 PS50088 Ankyrin

IPR002110 1100 1132 PS50088 Ankyrin

IPR002110 1134 1166 PS50088 Ankyrin

IPR002110 1167 1199 PS50088 Ankyrin

IPR002110 1202 1234 PS50088 Ankyrin

IPR002110 1235 1267 PS50088 Ankyrin

IPR004088 1608 1672 PS50084 K Homology

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002110	999	1011	PR01415	Ankyrin
IPR002110	1011	1023	PR01415	Ankyrin
HMMPfam	IPR002110	125	149	PF00023	Ankyrin
IPR002110	150	182	PF00023	Ankyrin
IPR002110	184	216	PF00023	Ankyrin
IPR002110	217	249	PF00023	Ankyrin
IPR002110	250	282	PF00023	Ankyrin
IPR002110	284	316	PF00023	Ankyrin
IPR002110	317	349	PF00023	Ankyrin
IPR002110	350	382	PF00023	Ankyrin
IPR002110	383	415	PF00023	Ankyrin
IPR002110	417	449	PF00023	Ankyrin
IPR002110	450	479	PF00023	Ankyrin
IPR002110	480	512	PF00023	Ankyrin
IPR002110	513	545	PF00023	Ankyrin
IPR002110	547	579	PF00023	Ankyrin
IPR002110	580	607	PF00023	Ankyrin
IPR000432	688	705	PF00488	DNA mismatch repair protein MutS
IPR002110	965	997	PF00023	Ankyrin
IPR002110	998	1030	PF00023	Ankyrin
IPR002110	1032	1064	PF00023	Ankyrin
IPR002110	1065	1097	PF00023	Ankyrin
IPR002110	1100	1132	PF00023	Ankyrin
IPR002110	1134	1166	PF00023	Ankyrin
IPR002110	1167	1199	PF00023	Ankyrin
IPR002110	1202	1234	PF00023	Ankyrin
IPR002110	1235	1267	PF00023	Ankyrin
IPR002110	1268	1290	PF00023	Ankyrin
IPR004088	1610	1672	PF00013	K Homology
HMMSmart	IPR002110	117	146	SM00248	Ankyrin
IPR002110	150	179	SM00248	Ankyrin
IPR002110	184	213	SM00248	Ankyrin
IPR002110	217	246	SM00248	Ankyrin
IPR002110	250	279	SM00248	Ankyrin
IPR002110	284	313	SM00248	Ankyrin
IPR002110	317	346	SM00248	Ankyrin
IPR002110	350	379	SM00248	Ankyrin
IPR002110	383	412	SM00248	Ankyrin
IPR002110	417	446	SM00248	Ankyrin
IPR002110	447	476	SM00248	Ankyrin
IPR002110	480	509	SM00248	Ankyrin
IPR002110	513	542	SM00248	Ankyrin
IPR002110	547	576	SM00248	Ankyrin
IPR002110	580	609	SM00248	Ankyrin
IPR002110	965	994	SM00248	Ankyrin
IPR002110	998	1027	SM00248	Ankyrin
IPR002110	1032	1061	SM00248	Ankyrin
IPR002110	1065	1094	SM00248	Ankyrin
IPR002110	1100	1129	SM00248	Ankyrin
IPR002110	1134	1163	SM00248	Ankyrin
IPR002110	1167	1196	SM00248	Ankyrin
IPR002110	1202	1231	SM00248	Ankyrin
IPR002110	1235	1264	SM00248	Ankyrin
IPR002110	1268	1297	SM00248	Ankyrin
IPR004087	1607	1677	SM00322	K Homology
ProfileScan	IPR002110	117	1290	PS50297	Ankyrin
IPR002110	184	216	PS50088	Ankyrin
IPR002110	217	249	PS50088	Ankyrin
IPR002110	250	282	PS50088	Ankyrin
IPR002110	284	316	PS50088	Ankyrin
IPR002110	317	349	PS50088	Ankyrin
IPR002110	350	382	PS50088	Ankyrin
IPR002110	383	415	PS50088	Ankyrin
IPR002110	447	479	PS50088	Ankyrin
IPR002110	480	512	PS50088	Ankyrin
IPR002110	513	545	PS50088	Ankyrin
IPR002110	547	579	PS50088	Ankyrin
IPR002110	965	997	PS50088	Ankyrin
IPR002110	998	1030	PS50088	Ankyrin
IPR002110	1032	1064	PS50088	Ankyrin
IPR002110	1065	1097	PS50088	Ankyrin
IPR002110	1100	1132	PS50088	Ankyrin
IPR002110	1134	1166	PS50088	Ankyrin
IPR002110	1167	1199	PS50088	Ankyrin
IPR002110	1202	1234	PS50088	Ankyrin
IPR002110	1235	1267	PS50088	Ankyrin
IPR004088	1608	1672	PS50084	K Homology

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: TGGAGGAAATCACAAGTGGCC

Primer_r
: GGTAAAACGGATGATGATGGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 4

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGGAGGAAATCACAAGTGGCC
Primer_r	: GGTAAAACGGATGATGATGGG
PCR product length	: 162 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	993 bp
Genome contig ID	gi89161207r_74059819
PolyA signal sequence (ATTAAA,-20)	+--------+--------+----*----+---- CTTAATATTCTGTTTATTAAATAATTCAATGTACT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATTTTATATTGGATGATATTGATTCTTAACATTGGCTTTTCAGTCATCAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	4	r	74159819	74342903	34	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0697

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information