HUGE

Gene/Protein Characteristic Table for KIAA1206

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00767
Accession No. :	AB033032
Description :	Plexin-B3 precursor.
HUGO Gene Name :
Clone Name :	fg04331 [Vector Info]
Flexi ORF Clone :	pF1KSDA1206
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 6145 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 301 bp

Genome contig ID gi89161218f_152582905
PolyA signal sequence
(AATAAA,-29)
+----*----+----*----+----*----+----
TCCGGAAATAAAATAGAAATATGTCTTTTTATTTT
Flanking genome sequence
(115086 - 115135)
----+----*----+----*----+----*----+----*----+----*
ATTTTGAGACGGAGTCTCGCTCTCTCTCCCAGGCTGGAGTGCAGTGGCGC

Features of the protein sequence	Description

Length: 1912 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9ULL4	100.0	Plexin-B3; Flag...	Homo sapiens
EAW72815	99.9	plexin B3 [Homo...	Homo sapiens
BAF85224	99.7	unnamed protein...	Homo sapiens
BAH12182	99.7	unnamed protein...	Homo sapiens
XP_001085759	97.1	similar to plex...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB007867	9.2e-148	46.9	KIAA0407
AB046770	2.7e-77	35.5	KIAA1550
AB007932	1e-75	34.2	KIAA0463
AB014520	6.4e-45	35.3	KIAA0620
AB002313	6.9e-45	40.9	KIAA0315

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR001627 57 150 PF01403 Semaphorin/CD100 antigen

IPR002165 476 529 PF01437 Plexin

IPR002165 790 836 PF01437 Plexin

IPR002909 838 927 PF01833 Cell surface receptor IPT/TIG

IPR002909 930 1014 PF01833 Cell surface receptor IPT/TIG

IPR002909 1018 1147 PF01833 Cell surface receptor IPT/TIG

IPR002909 1162 1246 PF01833 Cell surface receptor IPT/TIG

IPR013548 1329 1879 PF08337 Plexin cytoplasmic region

HMMSmart IPR001627 57 458 SM00630 Semaphorin/CD100 antigen

IPR003659 476 529 SM00423 Plexin/semaphorin/integrin

IPR003659 623 685 SM00423 Plexin/semaphorin/integrin

IPR003659 790 836 SM00423 Plexin/semaphorin/integrin

IPR002909 837 928 SM00429 Cell surface receptor IPT/TIG

IPR002909 929 1015 SM00429 Cell surface receptor IPT/TIG

IPR002909 1017 1148 SM00429 Cell surface receptor IPT/TIG

ProfileScan IPR001627 34 474 PS51004 Semaphorin/CD100 antigen

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001627	57	150	PF01403	Semaphorin/CD100 antigen
IPR002165	476	529	PF01437	Plexin
IPR002165	790	836	PF01437	Plexin
IPR002909	838	927	PF01833	Cell surface receptor IPT/TIG
IPR002909	930	1014	PF01833	Cell surface receptor IPT/TIG
IPR002909	1018	1147	PF01833	Cell surface receptor IPT/TIG
IPR002909	1162	1246	PF01833	Cell surface receptor IPT/TIG
IPR013548	1329	1879	PF08337	Plexin cytoplasmic region
HMMSmart	IPR001627	57	458	SM00630	Semaphorin/CD100 antigen
IPR003659	476	529	SM00423	Plexin/semaphorin/integrin
IPR003659	623	685	SM00423	Plexin/semaphorin/integrin
IPR003659	790	836	SM00423	Plexin/semaphorin/integrin
IPR002909	837	928	SM00429	Cell surface receptor IPT/TIG
IPR002909	929	1015	SM00429	Cell surface receptor IPT/TIG
IPR002909	1017	1148	SM00429	Cell surface receptor IPT/TIG
ProfileScan	IPR001627	34	474	PS51004	Semaphorin/CD100 antigen

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 24 RWPPFGLCLLLLLLSPPPLPLTG 46 SECONDARY 23

2 1261 VGMGAAVLIAAVLLLTLMYR 1280 PRIMARY 20

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	24	RWPPFGLCLLLLLLSPPPLPLTG	46	SECONDARY	23
2	1261	VGMGAAVLIAAVLLLTLMYR	1280	PRIMARY	20

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTCATTGACTCCTGTACCACC

Primer_r
: AGTTCATCTCCTGGTAGCTCG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 6

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTCATTGACTCCTGTACCACC
Primer_r	: AGTTCATCTCCTGGTAGCTCG
PCR product length	: 160(400) bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	301 bp
Genome contig ID	gi89161218f_152582905
PolyA signal sequence (AATAAA,-29)	+--------+--------+----*----+---- TCCGGAAATAAAATAGAAATATGTCTTTTTATTTT
Flanking genome sequence (115086 - 115135)	----+--------+--------+--------+--------+----* ATTTTGAGACGGAGTCTCGCTCTCTCTCCCAGGCTGGAGTGCAGTGGCGC

Gene/Protein Characteristic Table for KIAA1206

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information