HUGE

Gene/Protein Characteristic Table for KIAA1355

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00813
Accession No. :	AB037776
Description :	immunoglobulin superfamily, member 9.
HUGO Gene Name :	immunoglobulin superfamily, member 9 (IGSF9)
Clone Name :	fj01564 [Vector Info]
Flexi ORF Clone :	pF1KSDA1355
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4036 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 298 bp

Genome contig ID gi89161185r_158063546
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TTTTTTACAGGTGAATAAACAAAGTTTGAAAGATG
Flanking genome sequence
(99907 - 99858)
----+----*----+----*----+----*----+----*----+----*
TTTCTGTGTGTTATCTGTCTTTGAGAGAGTGCCAGGAAAATCCCTGGACC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 158163453 158182010 21 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 1189 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9P2J2	100.0	Protein turtle ...	Homo sapiens
XP_001117344	98.2	similar to immu...	Macaca mulatta
EDL39011	88.0	immunoglobulin ...	Mus musculus
XP_545751	89.4	similar to immu...	Canis lupus fam...
EDL39013	88.0	immunoglobulin ...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB028953	6.9e-08	29.3	KIAA1030
AB018299	6e-07	25.7	KIAA0756
AB046788	4.1e-06	25.8	KIAA1568
D86983	9.5e-06	26.4	KIAA0230
AB032958	4.1e-05	23.7	KIAA1132

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR013106 21 141 PF07686 Immunoglobulin V-set

IPR013098 146 233 PF07679 Immunoglobulin I-set

IPR013106 236 330 PF07686 Immunoglobulin V-set

IPR013151 347 407 PF00047 Immunoglobulin

IPR013151 443 498 PF00047 Immunoglobulin

IPR003961 518 606 PF00041 Fibronectin

IPR003961 634 718 PF00041 Fibronectin

HMMSmart IPR003599 36 141 SM00409 Immunoglobulin subtype

IPR003598 42 125 SM00408 Immunoglobulin subtype 2

IPR003599 153 234 SM00409 Immunoglobulin subtype

IPR003598 159 223 SM00408 Immunoglobulin subtype 2

IPR003599 243 330 SM00409 Immunoglobulin subtype

IPR003598 249 318 SM00408 Immunoglobulin subtype 2

IPR003599 339 422 SM00409 Immunoglobulin subtype

IPR003598 345 412 SM00408 Immunoglobulin subtype 2

IPR003599 434 514 SM00409 Immunoglobulin subtype

IPR003598 441 503 SM00408 Immunoglobulin subtype 2

IPR003961 518 603 SM00060 Fibronectin

IPR003961 634 713 SM00060 Fibronectin

ProfileScan IPR007110 34 120 PS50835 Immunoglobulin-like

IPR007110 146 226 PS50835 Immunoglobulin-like

IPR007110 236 328 PS50835 Immunoglobulin-like

IPR007110 332 420 PS50835 Immunoglobulin-like

IPR007110 428 512 PS50835 Immunoglobulin-like

IPR003961 518 614 PS50853 Fibronectin

IPR003961 633 724 PS50853 Fibronectin

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR013106	21	141	PF07686	Immunoglobulin V-set
IPR013098	146	233	PF07679	Immunoglobulin I-set
IPR013106	236	330	PF07686	Immunoglobulin V-set
IPR013151	347	407	PF00047	Immunoglobulin
IPR013151	443	498	PF00047	Immunoglobulin
IPR003961	518	606	PF00041	Fibronectin
IPR003961	634	718	PF00041	Fibronectin
HMMSmart	IPR003599	36	141	SM00409	Immunoglobulin subtype
IPR003598	42	125	SM00408	Immunoglobulin subtype 2
IPR003599	153	234	SM00409	Immunoglobulin subtype
IPR003598	159	223	SM00408	Immunoglobulin subtype 2
IPR003599	243	330	SM00409	Immunoglobulin subtype
IPR003598	249	318	SM00408	Immunoglobulin subtype 2
IPR003599	339	422	SM00409	Immunoglobulin subtype
IPR003598	345	412	SM00408	Immunoglobulin subtype 2
IPR003599	434	514	SM00409	Immunoglobulin subtype
IPR003598	441	503	SM00408	Immunoglobulin subtype 2
IPR003961	518	603	SM00060	Fibronectin
IPR003961	634	713	SM00060	Fibronectin
ProfileScan	IPR007110	34	120	PS50835	Immunoglobulin-like
IPR007110	146	226	PS50835	Immunoglobulin-like
IPR007110	236	328	PS50835	Immunoglobulin-like
IPR007110	332	420	PS50835	Immunoglobulin-like
IPR007110	428	512	PS50835	Immunoglobulin-like
IPR003961	518	614	PS50853	Fibronectin
IPR003961	633	724	PS50853	Fibronectin

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 7 ASWAMVWCLGLAVLSLVISQGAD 29 PRIMARY 23

2 64 VIEWLRFGFLLPIFIQFGLYSPR 86 PRIMARY 23

3 743 QPVLAGVVGGVCFLGVAVLVSIL 765 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	7	ASWAMVWCLGLAVLSLVISQGAD	29	PRIMARY	23
2	64	VIEWLRFGFLLPIFIQFGLYSPR	86	PRIMARY	23
3	743	QPVLAGVVGGVCFLGVAVLVSIL	765	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: AATGTGAGGCTGTGAAAAGGC

Primer_r
: ACATTCCATACCAAGGTGACC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AATGTGAGGCTGTGAAAAGGC
Primer_r	: ACATTCCATACCAAGGTGACC
PCR product length	: 151 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	298 bp
Genome contig ID	gi89161185r_158063546
PolyA signal sequence (AATAAA,-22)	+--------+--------+----*----+---- TTTTTTACAGGTGAATAAACAAAGTTTGAAAGATG
Flanking genome sequence (99907 - 99858)	----+--------+--------+--------+--------+----* TTTCTGTGTGTTATCTGTCTTTGAGAGAGTGCCAGGAAAATCCCTGGACC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	158163453	158182010	21	99.6	Perfect prediction

Gene/Protein Characteristic Table for KIAA1355

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information