HUGE

Gene/Protein Characteristic Table for KIAA1370

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK05656
Accession No. :	AB037791
Description :
HUGO Gene Name :
Clone Name :	fj03240 [Vector Info]
Flexi ORF Clone :	pF1KA1370
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3863 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 490 bp

Genome contig ID gi51511731r_50561153
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
AAAATGAGAATAAAATGTTGAGCTTCTTTAAAAGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACACACTATGCAAGCATGTGTACTTTTTATATCTCTCATGTTTAGTTTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 15 r 50661153 50758101 13 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 1107 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAF85606	99.6	unnamed protein...	Homo sapiens
BAG57301	99.7	unnamed protein...	Homo sapiens
XP_001087128	96.9	similar to CG90...	Macaca mulatta
XP_001087724	96.9	similar to CG90...	Macaca mulatta
XP_851212	84.5	similar to CG90...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB040972	1.8e-35	54.2	KIAA1539

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCCTTATATGGGTGTGATTAC

Primer_r
: TTGTCGTAGGAATGTCTGATG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 15

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	490 bp
Genome contig ID	gi51511731r_50561153
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- AAAATGAGAATAAAATGTTGAGCTTCTTTAAAAGT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACACACTATGCAAGCATGTGTACTTTTTATATCTCTCATGTTTAGTTTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	15	r	50661153	50758101	13	99.5	Perfect prediction

Primer_f	: TCCTTATATGGGTGTGATTAC
Primer_r	: TTGTCGTAGGAATGTCTGATG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1370

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information