HUGE

Gene/Protein Characteristic Table for KIAA1539

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK02039
Accession No. :	AB040972
Description :
HUGO Gene Name :
Clone Name :	fg02356 [Vector Info]
Flexi ORF Clone :	pF1KA1539
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5771 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1098 bp

Genome contig ID gi89161216r_34994222
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
AAAAAAGAAAGAATAAATTCTTGTTTGGAAACTTG
Flanking genome sequence
(99898 - 99849)
----+----*----+----*----+----*----+----*----+----*
AACTAAGCTCTACTTTTGTTGTTGTTGTTGTTGTTGGGGAGAGGGTGTGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 9 r 35094120 35101571 8 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 543 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001165916	1.3e-179	99.1	hypothetical pr...	Pan troglodytes
XP_001090314	4.7e-178	98.7	similar to CG90...	Macaca mulatta
XP_852785	5.4e-168	93.7	similar to CG90...	Canis lupus fam...
BAE36360	2e-161	90.9	unnamed protein...	Mus musculus
AAH71191	2.2e-161	90.9	RIKEN cDNA B230...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB037791	1.3e-17	54.2	KIAA1370

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TCCCACTCTCAGATATTGCTC

Primer_r
: TGGCTTTCAGAGATAGGTCAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 9

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1098 bp
Genome contig ID	gi89161216r_34994222
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- AAAAAAGAAAGAATAAATTCTTGTTTGGAAACTTG
Flanking genome sequence (99898 - 99849)	----+--------+--------+--------+--------+----* AACTAAGCTCTACTTTTGTTGTTGTTGTTGTTGTTGGGGAGAGGGTGTGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	9	r	35094120	35101571	8	99.3	Perfect prediction

Primer_f	: TCCCACTCTCAGATATTGCTC
Primer_r	: TGGCTTTCAGAGATAGGTCAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1539

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information