HUGE

Gene/Protein Characteristic Table for KIAA1755

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :
Accession No. :	AB051542
Description :	Novel protein.
HUGO Gene Name :
Clone Name :	fg04230 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5899 bp
Physical map
Restriction map
The cloned DNA sequence was revised by direct RT-PCR/sequencing experiments following the alert of coding interruption by GeneMark analysis.
Comparison between the cloned and the revised DNA sequences.
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq. revised DNA seq.
Warning for N-terminal truncation:
YES YES

Warning for coding interruption:
YES NO

Integrity of 3' end

Length of 3'UTR 2537 bp

Genome contig ID gi51511747r_36172321
PolyA signal sequence
(TATAAA,-26)
+----*----+----*----+----*----+----
GTAACAATGTATAAAAATATCGAATAATAACAGCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACATTTCTTTTGCATTTTCTTTGTGCCTAGCTTTGAGCTAAATCCTCTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 20 r 36272321 36303676 12 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 1110 aa
This protein sequence is predicted from the revised DNA sequence

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_514635	0	98.2	hypothetical pr...	Pan troglodytes
XP_001094820	0	92.9	similar to quat...	Macaca mulatta
XP_542992	0	74.1	similar to quat...	Canis lupus fam...
BAC35060	3.2e-183	62.4	unnamed protein...	Mus musculus
EDL06259	5.2e-183	62.4	RIKEN cDNA D630...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB067496	4.3e-16	31.2	KIAA1909

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTGGAATCTGCGTTTGTAGCC

Primer_r
: GGAATGCAAGAATCAAACCTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAAGGAGGATGAGCTGCTGTC
Primer_r	: AAGATGATGCCTCCAACACCC
PCR product length	: 167 bp
PCR conditions	: 95 °C15 sec66 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.	revised DNA seq.
Warning for N-terminal truncation:	YES	YES
Warning for coding interruption:	YES	NO

Length of 3'UTR	2537 bp
Genome contig ID	gi51511747r_36172321
PolyA signal sequence (TATAAA,-26)	+--------+--------+----*----+---- GTAACAATGTATAAAAATATCGAATAATAACAGCT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACATTTCTTTTGCATTTTCTTTGTGCCTAGCTTTGAGCTAAATCCTCTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	20	r	36272321	36303676	12	99.2	Perfect prediction

Primer_f	: CTGGAATCTGCGTTTGTAGCC
Primer_r	: GGAATGCAAGAATCAAACCTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1755

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information