HUGE

Gene/Protein Characteristic Table for KIAA1761

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK02052
Accession No. :	AB051548
Description :	Protein FAM40A.
HUGO Gene Name :	family with sequence similarity 40, member A (FAM40A)
Clone Name :	ha03234 [Vector Info]
Flexi ORF Clone :	pF1KA1761
Source :	Myeloblast cell line (KG-1)
Note :	We replaced fh26843, former representative clones for KIAA1761 with ha03234. (2001/2/07)

Features of the cloned DNA sequence	Description

Length: 3237 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 721 bp

Genome contig ID gi89161185f_110278781
PolyA signal sequence
(ATTAAA,-13)
+----*----+----*----+----*----+----
TGTGATTGTGTATTCTGTTTACATTAAAAAGAAGC
Flanking genome sequence
(119999 - 120048)
----+----*----+----*----+----*----+----*----+----*
AAAAATAATTCCCGTTGGCTTGTCTACAGGAAATATGGCCTCTACGTATC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 110378781 110398778 21 99.7 Perfect prediction

Features of the protein sequence	Description

Length: 837 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAF83748	99.9	unnamed protein...	Homo sapiens
Q9GLZ5	99.5	Protein FAM40A.	Macaca fascicularis
Q5R7S4	99.3	Protein FAM40A.	Pongo abelii
XP_001493762	98.8	similar to CG11...	Equus caballus
Q0P5J8	98.8	Protein FAM40A.	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB032996	4.9e-78	69.9	KIAA1170

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR012486 50 363 PF07923 N1221-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012486	50	363	PF07923	N1221-like

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 512 GLLPSLPQYMIALLKILLAAAP 533 SECONDARY 22

2 571 KEVIVKAISAVLLLLLKHFKLNH 593 PRIMARY 23

3 597 FEYMAQHLVFANCIPLILKFFNQ 619 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	512	GLLPSLPQYMIALLKILLAAAP	533	SECONDARY	22
2	571	KEVIVKAISAVLLLLLKHFKLNH	593	PRIMARY	23
3	597	FEYMAQHLVFANCIPLILKFFNQ	619	SECONDARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	721 bp
Genome contig ID	gi89161185f_110278781
PolyA signal sequence (ATTAAA,-13)	+--------+--------+----*----+---- TGTGATTGTGTATTCTGTTTACATTAAAAAGAAGC
Flanking genome sequence (119999 - 120048)	----+--------+--------+--------+--------+----* AAAAATAATTCCCGTTGGCTTGTCTACAGGAAATATGGCCTCTACGTATC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	110378781	110398778	21	99.7	Perfect prediction

Gene/Protein Characteristic Table for KIAA1761

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information