HUGE

Gene/Protein Characteristic Table for KIAA1883

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00294
Accession No. :	AB067470
Description :	Serine/threonine-protein kinase LMTK3 precursor.
HUGO Gene Name :	lemur tyrosine kinase 3 (LMTK3)
Clone Name :	fh02249 [Vector Info]
Flexi ORF Clone :	pF1KA1883
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4943 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 500 bp

Genome contig ID gi42406306r_53580342
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATTATTTAAAAAAGACAAAAACAACCTTTTGGAGG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACACGGGGCCTGTGCGTATTTCGCGAGGTGAGGAGGGGAGGATGCAGGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 19 r 53680342 53708231 16 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1480 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
NP_001073903	100.0	lemur tyrosine ...	Homo sapiens
Q96Q04	100.0	Serine/threonin...	Homo sapiens
EAW52353	99.9	hCG1811754 [Hom...	Homo sapiens
XP_001789580	93.0	similar to Seri...	Bos taurus
BAF64834	88.2	apoptosis-assoc...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB014541	1.1e-26	35.5	KIAA0641
AB029002	7.6e-26	30.6	KIAA1079

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR000719 156 426 PD000001 Protein kinase

FPrintScan IPR001245 230 243 PR00109 Tyrosine protein kinase

IPR001245 276 294 PR00109 Tyrosine protein kinase

IPR001245 351 373 PR00109 Tyrosine protein kinase

HMMPfam IPR001245 153 428 PF07714 Tyrosine protein kinase

HMMSmart IPR001245 153 428 SM00219 Tyrosine protein kinase

IPR002290 153 1371 SM00220 Serine/threonine protein kinase

ProfileScan IPR000719 153 431 PS50011 Protein kinase

ScanRegExp IPR000719 159 184 PS00107 Protein kinase

IPR008266 282 294 PS00109 Tyrosine protein kinase

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000719	156	426	PD000001	Protein kinase
FPrintScan	IPR001245	230	243	PR00109	Tyrosine protein kinase
IPR001245	276	294	PR00109	Tyrosine protein kinase
IPR001245	351	373	PR00109	Tyrosine protein kinase
HMMPfam	IPR001245	153	428	PF07714	Tyrosine protein kinase
HMMSmart	IPR001245	153	428	SM00219	Tyrosine protein kinase
IPR002290	153	1371	SM00220	Serine/threonine protein kinase
ProfileScan	IPR000719	153	431	PS50011	Protein kinase
ScanRegExp	IPR000719	159	184	PS00107	Protein kinase
IPR008266	282	294	PS00109	Tyrosine protein kinase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 21 MPAPGALILLAAVSASGCLASPA 43 SECONDARY 23

2 57 PPYAVVLISCSGLLAFIFLLLTC 79 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	21	MPAPGALILLAAVSASGCLASPA	43	SECONDARY	23
2	57	PPYAVVLISCSGLLAFIFLLLTC	79	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGCTGATTATGGAGTTCTGTC

Primer_r
: ACGTAGTTGTGGGAATGCAGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 19

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	500 bp
Genome contig ID	gi42406306r_53580342
PolyA signal sequence (None)	+--------+--------+----*----+---- ATTATTTAAAAAAGACAAAAACAACCTTTTGGAGG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACACGGGGCCTGTGCGTATTTCGCGAGGTGAGGAGGGGAGGATGCAGGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	19	r	53680342	53708231	16	99.9	Perfect prediction

Primer_f	: TGCTGATTATGGAGTTCTGTC
Primer_r	: ACGTAGTTGTGGGAATGCAGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1883

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information