HUGE

Gene/Protein Characteristic Table for KIAA2006

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04300
Accession No. :	AB095927
Description :	Uncharacterized protein C10orf18.
HUGO Gene Name :
Clone Name :	ff02026 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4810 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 704 bp

Genome contig ID gi89161187f_5712741
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TGTGTTTCATTTTTTAAATAAAGACAACTAAAAAT
Flanking genome sequence
(132968 - 133017)
----+----*----+----*----+----*----+----*----+----*
AATCTCTTTCTGCAATGATTTTTATAGCAGAAATTGACTTATCTGGAGTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 f 5812741 5845707 8 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 1367 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAC87251	96.5	unnamed protein...	Homo sapiens
EAW86433	96.5	hCG2042943 [Hom...	Homo sapiens
Q5VWN6	96.4	Uncharacterized...	Homo sapiens
CAH72617	99.8	chromosome 10 o...	Homo sapiens
XP_507637	94.7	similar to chro...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB029028	5.3e-26	28.8	KIAA1105

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TAAAACAATGGTCATGGAGGC

Primer_r
: AGAGGCTGATGATGAGTCCAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	704 bp
Genome contig ID	gi89161187f_5712741
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TGTGTTTCATTTTTTAAATAAAGACAACTAAAAAT
Flanking genome sequence (132968 - 133017)	----+--------+--------+--------+--------+----* AATCTCTTTCTGCAATGATTTTTATAGCAGAAATTGACTTATCTGGAGTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	f	5812741	5845707	8	99.1	Perfect prediction

Primer_f	: TAAAACAATGGTCATGGAGGC
Primer_r	: AGAGGCTGATGATGAGTCCAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA2006

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information