発表論文

2022 2021 2020

De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’
Kenta Shirasawa, Hideki Hirakawa, Akifumi Azuma, Fumiya Taniguchi, Toshiya Yamamoto, Akihiko Sato, Andrea Ghelfi, Sachiko N Isobe
DNA Res. 2022;29(6):dsac040. doi:10.1093/dnares/dsac040
doi:10.1093/dnares/dsac040

Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii
Yoshinori Hasegawa, Takashi Watanabe, Reo Otsuka, Shigenobu Toné, Shin Kubota, Hideki Hirakawa
DNA Res. 2023;30(1):dsac047.
doi:10.1093/dnares/dsac047

Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma
Kenta Shirasawa, Ryohei Arimoto, Hideki Hirakawa, Motoyuki Ishimori, Andrea Ghelfi, Masami Miyasaka, Makoto Endo, Saneyuki Kawabata, Sachiko N Isobe
G3 (Bethesda). 2023;13(2):jkac329.
doi:10.1093/g3journal/jkac329

Plant GARDEN: a portal website for accessing plant genome, DNA marker, and SNP information
H. Ichihara, H. Hirakawa, A. Ghelfi, M. Kohara, M. Yamada, T. Tamura, A. Nakaya, Y. Nakamura, S. Shirasawa, E. Sugihara, S. Tabata, S. Isobe
Acta Hortic. 2022;1339:415-418.
doi:10.17660/ActaHortic.2022.1339.52

Widespread and transgenerational retrotransposon activation in inter- and intraspecies recombinant inbred populations of Lotus japonicus
Eigo Fukai, Manabu Yoshikawa, Niraj Shah, Niels Sandal, Akio Miyao, Seijiro Ono, Hideki Hirakawa, Turgut Yigit Akyol, Yosuke Umehara, Ken-Ichi Nonomura, Jens Stougaard, Hirohiko Hirochika, Makoto Hayashi, Shusei Sato, Stig Uggerhøj Andersen, Keiichi Okazaki
Plant J. 2022;111(5):1397-1410.
doi:10.1111/tpj.15896

Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping
Daisuke Sekine, Satoshi Oku, Tsukasa Nunome, Hideki Hirakawa, Mai Tsujimura, Toru Terachi, Atsushi Toyoda, Masayoshi Shigyo, Shusei Sato, Hikaru Tsukazaki
DNA Res. 2022;29(5):dsac020.
doi:10.1093/dnares/dsac020

Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica)
Kentaro Mishima, Hideki Hirakawa, Taiichi Iki, Yoko Fukuda, Tomonori Hirao, Akira Tamura, Makoto Takahashi
BMC Plant Biol. 2022;22(1):470. Published 2022 Oct 4.
doi:10.1186/s12870-022-03862-9

A genome-wide association and fine-mapping study of white rust resistance in hexaploid chrysanthemum cultivars with a wild diploid reference genome
Katsuhiko Sumitomo, Kenta Shirasawa, Sachiko Isobe, Hideki Hirakawa, Akiho Harata, Michiharu Nakano, Yoshihiro Nakano, Masafumi Yagi, Tamotsu Hisamatsu, Hiroyasu Yamaguchi, Fumiya Taniguchi
Hortic Res. 2022;9:uhac170. Published 2022 Aug 3.
doi:10.1093/hr/uhac170

Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis
Amit Rai, Hideki Hirakawa, Megha Rai, Yohei Shimizu, Kenta Shirasawa, Shinji Kikuchi, Hikaru Seki, Mami Yamazaki, Atsushi Toyoda, Sachiko Isobe, Toshiya Muranaka, Kazuki Saito
DNA Res. 2022;29(6):dsac043.
doi:10.1093/dnares/dsac043

Development of RIKEN Plant Metabolome MetaDatabase
Atsushi Fukushima, Mikiko Takahashi, Hideki Nagasaki, Yusuke Aono, Makoto Kobayashi, Miyako Kusano, Kazuki Saito, Norio Kobayashi, Masanori Arita
Plant Cell Physiol. 2022;63(3):433-440.
doi:10.1093/pcp/pcab173

Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response<
Naoki Yokotani, Yoshinori Hasegawa, Masaru Sato, Hideki Hirakawa, Yusuke Kouzai, Yoko Nishizawa, Eiji Yamamoto, Yoshiki Naito, Sachiko Isobe
BMC Plant Biol. 2021;21(1):476. Published 2021 Oct 19.
doi:10.1186/s12870-021-03251-8

Enhanced resistance to fungal and bacterial diseases in tomato and Arabidopsis expressing BSR2 from rice
Satoru Maeda, Naoki Yokotani, Kenji Oda, Masaki Mori
Plant Cell Rep. 2020;39(11):1493-1503.
doi:10.1007/s00299-020-02578-0