Order Kazusa clone(s) from :
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Other countries |
Product ID | ORK00037 |
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Accession No | D86984 |
Description | leucine rich repeat containing 8 family, member B, transcript variant 1 |
Clone name | fk16230 |
Vector information | |
cDNA sequence | DNA sequence (3615 bp) Predicted protein sequence (823 aa) |
HaloTag ORF Clone |
FHC00037
|
Flexi ORF Clone | FXC00037 |
Source | Human fetal brain |
Rouge ID |
mKIAA0231
by Kazusa Mouse cDNA Project
|
Note | We replaced ha02410, former representative clones for KIAA0231 with fk16230. (2005/08/06) |
N-terminal truncation | Coding interruption | |
---|---|---|
cloned DNA seq | No warning | No warning |
Length of 3'UTR | 333 bp |
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Genome contig ID | gi89161185f_89687489 |
PolyA signal sequence (None) |
+----*----+----*----+----*----+---- |
Flanking genome sequence (144037 - 144086) |
----+----*----+----*----+----*----+----*----+----* |
Ensembl ContigView (Add our DAS server as a DAS source)
Chr | f/r | start | end | exon | identity | class | |
---|---|---|---|---|---|---|---|
| 1 | f | 89787489 | 89831524 | 6 | 99.7 | Perfect prediction |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.Result of homology search against HUGE database (FASTA output, Multiple alignment)
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
FPrintScan | IPR001611 | 630 | 643 | PR00019 | Leucine-rich repeat |
IPR001611 | 675 | 688 | PR00019 | Leucine-rich repeat | |
HMMPfam | IPR001611 | 531 | 557 | PF00560 | Leucine-rich repeat |
IPR001611 | 606 | 627 | PF00560 | Leucine-rich repeat | |
IPR001611 | 629 | 652 | PF00560 | Leucine-rich repeat | |
IPR001611 | 654 | 675 | PF00560 | Leucine-rich repeat | |
IPR001611 | 677 | 698 | PF00560 | Leucine-rich repeat | |
IPR001611 | 700 | 721 | PF00560 | Leucine-rich repeat | |
IPR001611 | 769 | 790 | PF00560 | Leucine-rich repeat | |
HMMSmart | IPR003591 | 529 | 556 | SM00369 | Leucine-rich repeat |
IPR003591 | 604 | 627 | SM00369 | Leucine-rich repeat | |
IPR003591 | 629 | 650 | SM00369 | Leucine-rich repeat | |
IPR003591 | 652 | 674 | SM00369 | Leucine-rich repeat | |
IPR003591 | 675 | 698 | SM00369 | Leucine-rich repeat | |
IPR003591 | 699 | 720 | SM00369 | Leucine-rich repeat | |
IPR003591 | 721 | 744 | SM00369 | Leucine-rich repeat | |
IPR003591 | 767 | 790 | SM00369 | Leucine-rich repeat |
Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 5 | LFNFFHCISVLLQGKVMITLTEL | 27 | SECONDARY | 23 | 2 | 283 | IVKVILFVLIITYVPYFLTHITL | 305 | PRIMARY | 23 | 3 | 325 | VYSLAEIFKVLASFYVILVILYG | 347 | PRIMARY | 23 |
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Panel name | |
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Primer_f | - |
Primer_r | - |
PCR product length | - |
PCR conditions | - |