• Link
  Rouge GTOP UniProt GeneCards RefDIC
• Features
  DNA sequence Protein sequence Expression Mapping
• HUGE
  Top page Gene List

Gene/Protein Characteristic Table for KIAA0548

Order Kazusa clone(s) from : Japan || Other countries

Product ID	ORK04232
Accession No	AB011120
Description	attractin
Clone name	hh00769
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5632 bp) Predicted protein sequence (452 aa)
Source	Human adult brain
Rouge ID	mKIAA0548 by Kazusa Mouse cDNA Project

Length: 5632 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 452 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002165	9	84	PF01437	Plexin
	IPR002049	86	129	PF00053	EGF-like
	IPR002049	132	178	PF00053	EGF-like
HMMSmart	IPR003659	9	84	SM00423	Plexin/semaphorin/integrin
	IPR002049	86	129	SM00180	EGF-like
	IPR002049	132	178	SM00180	EGF-like
ProfileScan	IPR002049	86	131	PS50027	EGF-like
	IPR002049	132	180	PS50027	EGF-like
ScanRegExp	IPR002049	100	134	PS01248	EGF-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	273	NITFFVYVSNFTWPIKIQIAFSQ	295	SECONDARY	23
	2	301	DLVQFFVTFFSCFLSLLLVAAVV	323	PRIMARY	23

RT-PCR

Experimental conditions

Chromosome No. 20
Experimental conditions

Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp