Gene/Protein Characteristic Table for KIAA0909
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Product ID ORK01135
Accession No AB020716
Description calmodulin binding transcription activator 2, transcript variant 1
Clone name hk10471
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4465 bp)
Predicted protein sequence (1234 aa)
Flexi ORF Clone FXC01135
Source Human adult brain
Rouge ID mKIAA0909 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4465 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 758 bp
Genome contig ID gi51511734r_4712017
PolyA signal sequence
(ATTAAA,-18)
+----*----+----*----+----*----+----
GGTTTATACGAATTGCCATTAAACATCGCTGCACC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AGCCAGCCTCCGGCCTCTGTCTGCGGGGGCGGGGCGGGGCCTAGGCCAGC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 r 4812017 4831645 23 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 1234 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG11256 0 100.0 calmodulin-bind...
synthetic construct
EAW90372 0 99.9 hCG1986010, iso...
Homo sapiens
O94983 0 99.8 Calmodulin-bind...
Homo sapiens
AAI42696 0 99.7 Calmodulin bind...
Homo sapiens
EAW90371 0 99.3 hCG1986010, iso...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB020640 1.2e-33 42.3 KIAA0833
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR005559 66 182 PF03859 CG-1
IPR002909 565 646 PF01833 Cell surface receptor IPT/TIG
IPR002110 742 762 PF00023 Ankyrin
IPR002110 787 807 PF00023 Ankyrin
IPR002110 821 841 PF00023 Ankyrin
IPR000048 1134 1154 PF00612 IQ calmodulin-binding region
ProfileScan IPR002110 742 841 PS50297 Ankyrin
IPR000048 1133 1159 PS50096 IQ calmodulin-binding region
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GGAGGGGTCTTGTACATACTG
Primer_r AAGTAGAAAGTGCCCGTGGAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name GeneBridge 4
Primer_f GGAGGGGTCTTGTACATACTG
Primer_r AAGTAGAAAGTGCCCGTGGAG
PCR product length 141 bp
PCR conditions 95 °C15 sec64 °C60 sec30 cycles
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