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Order Kazusa clone(s) from : |
| Product ID | ORK05591 |
|---|---|
| Accession No | AB058740 |
| Description | KIAA0319-like |
| Clone name | fh22040s1 |
| Vector information | |
| cDNA sequence | DNA sequence (4423 bp) Predicted protein sequence (639 aa) |
| Source | Human fetal brain |
| Rouge ID |
mKIAA1837
by Kazusa Mouse cDNA Project
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| Note | We replaced fh22040, former representative clones for KIAA1837 with fh22040s1. (2002/5/10) |
Length: 4423 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).
| N-terminal truncation | Coding interruption | |
|---|---|---|
| cloned DNA seq | No warning | No warning |
Ensembl ContigView (Add our DAS server as a DAS source)
| Chr | f/r | start | end | exon | identity | class | |
|---|---|---|---|---|---|---|---|
|
| 1 | r | 35676730 | 35709095 | 15 | 99.9 | Terminal No-hit |
Length: 639 aa
Result of homology search against nr database
(FASTA output,
Multiple alignment)![]() |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database
(FASTA output,
Multiple alignment)The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
Result of InterProScan
| Search method | interpro_ID | From | To | Entry | Definition |
|---|---|---|---|---|---|
| HMMPfam | IPR000601 | 254 | 328 | PF00801 | PKD |
| IPR000601 | 340 | 425 | PF00801 | PKD | |
| HMMSmart | IPR000601 | 52 | 141 | SM00089 | PKD |
| IPR000601 | 147 | 237 | SM00089 | PKD | |
| IPR000601 | 243 | 331 | SM00089 | PKD | |
| IPR000601 | 337 | 428 | SM00089 | PKD | |
| ProfileScan | IPR000601 | 166 | 235 | PS50093 | PKD |
Prediction of transmembrane (TM) segments| Method | No. | N terminal | transmembrane region | C terminal | type | length | SOSUI2 | 1 | 574 | LYVIIATFVIVVALGILSWTVIC | 596 | PRIMARY | 23 |
|---|
RT-PCR-ELISA
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Experimental conditions| Primer_f | TGGAGAATTTCATCAAGGTGC |
|---|---|
| Primer_r | TACAACAACAGATCACAGTCC |
| PCR conditions | 95 °C 30 sec 55 °C 30 sec 72 °C 60 sec 30 cycles![]() |
Chromosome No. 1
Experimental conditions| Panel name | CCR |
|---|---|
| Primer_f | TGGAGAATTTCATCAAGGTGC |
| Primer_r | TACAACAACAGATCACAGTCC |
| PCR product length | 95 bp |
| PCR conditions | 15 °C 62 sec 60 °C 30 sec 135(700) cycles |