Gene/Protein Characteristic Table for FLJ00046
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK04892
Accession No AK024454
Clone name as00046
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4352 bp)
Predicted protein sequence (169 aa)
Source Human spleen
Features of the cloned cDNA sequence
Description

Length: 4352 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Features of the protein sequence
Description

Length: 169 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAB15744 3.1e-72 100.0 FLJ00046 protei...
Homo sapiens
BAB15716 2.9e-71 99.4 FLJ00015 protei...
Homo sapiens
AAC05172 3.2e-71 99.4 R29368_2 [Homo ...
Homo sapiens
NP_690882 5.1e-71 99.4 egf-like module...
Homo sapiens
NP_690885 5.3e-71 99.4 egf-like module...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AK024426 6.3e-77 99.4 FLJ00015
AB018329 4.7e-24 41.4 KIAA0786
AB020628 2e-23 44.5 KIAA0821
AB018311 3.3e-23 40.9 KIAA0768
D87469 4.1e-13 34.3 KIAA0279
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000832 1 131 PF00002 G-protein coupled receptor family 2 (secretin-like)
ProfileScan IPR000832 1 128 PS50261 G-protein coupled receptor family 2 (secretin-like)

Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length
SOSUI2 1 36 GPVCAIFSVNLVLFLVTLWILK 57 PRIMARY 22
2 80 ATAQLFILGCTWCLGILQVGPAA 102 PRIMARY 23
3 108 LFTIINSLQGVFIFLVYCLLSQQ 130 PRIMARY 23
Experimental conditions
Primer_f
Primer_r
PCR conditions test
Order Kazusa clone(s) from : Japan || Other countries
Back to the NEDO Protein Database homepage
Send a message to office AT kazusa.or.jp