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Other countries |
Product ID | ORK06220 |
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Accession No | AB037723 |
Description | teneurin transmembrane protein 4 |
Clone name | ff04539 |
Vector information | |
cDNA sequence | DNA sequence (10826 bp) Predicted protein sequence (2016 aa) |
Source | Human fetal brain |
Rouge ID |
mKIAA1302
by Kazusa Mouse cDNA Project
|
Note | We replaced fg06864 and bf00104, former representative clones for KIAA1302 with ff04539. (2002/5/10,2005/08/06) |
N-terminal truncation | Coding interruption | |
---|---|---|
cloned DNA seq | Warning | No warning |
Length of 3'UTR | 4775 bp |
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Genome contig ID | gi51511727r_77941977 |
PolyA signal sequence (AATAAA,-21) |
+----*----+----*----+----*----+---- |
Flanking genome sequence (100000 - 99951) |
----+----*----+----*----+----*----+----*----+----* |
Ensembl ContigView (Add our DAS server as a DAS source)
Chr | f/r | start | end | exon | identity | class | |
---|---|---|---|---|---|---|---|
| 11 | r | 78041977 | 78175696 | 19 | 99.5 | Perfect prediction |
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The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.Result of homology search against HUGE database (FASTA output, Multiple alignment)
|
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Search method | interpro_ID | From | To | Entry | Definition |
---|---|---|---|---|---|
HMMPfam | IPR013111 | 7 | 33 | PF07974 | EGF |
IPR001258 | 476 | 502 | PF01436 | NHL repeat | |
IPR001258 | 594 | 619 | PF01436 | NHL repeat | |
IPR001258 | 653 | 688 | PF01436 | NHL repeat | |
IPR001258 | 714 | 741 | PF01436 | NHL repeat | |
IPR001258 | 783 | 810 | PF01436 | NHL repeat | |
IPR006530 | 859 | 896 | PF05593 | YD repeat | |
IPR006530 | 922 | 960 | PF05593 | YD repeat | |
IPR006530 | 1464 | 1498 | PF05593 | YD repeat | |
IPR006530 | 1518 | 1571 | PF05593 | YD repeat | |
HMMSmart | IPR006210 | 6 | 34 | SM00181 | EGF |
IPR006210 | 46 | 78 | SM00181 | EGF | |
HMMTigr | IPR006530 | 859 | 900 | TIGR01643 | YD repeat |
IPR006530 | 923 | 964 | TIGR01643 | YD repeat | |
IPR006530 | 1134 | 1174 | TIGR01643 | YD repeat | |
IPR006530 | 1443 | 1482 | TIGR01643 | YD repeat | |
IPR006530 | 1518 | 1560 | TIGR01643 | YD repeat | |
ProfileScan | IPR000742 | 3 | 34 | PS50026 | EGF-like |
IPR000742 | 43 | 78 | PS50026 | EGF-like | |
ScanRegExp | IPR013032 | 22 | 33 | PS00022 | EGF-like region |
IPR013032 | 22 | 33 | PS01186 | EGF-like region | |
IPR013032 | 66 | 77 | PS00022 | EGF-like region | |
IPR013032 | 66 | 77 | PS01186 | EGF-like region |
RT-PCR-ELISA |
Primer_f | CATTGCTGAGGTGATAGAGAG |
---|---|
Primer_r | CCTTCCCACACTCTGATATTC |
PCR conditions | 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles |
Panel name | unigene |
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Primer_f | - |
Primer_r | - |
PCR product length | - |
PCR conditions | - |