Gene/Protein Characteristic Table for KIAA1302
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Product ID ORK06220
Accession No AB037723
Description teneurin transmembrane protein 4
Clone name ff04539
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (10826 bp)
Predicted protein sequence (2016 aa)
Source Human fetal brain
Rouge ID mKIAA1302 by Kazusa Mouse cDNA Project
Note We replaced fg06864 and bf00104, former representative clones for KIAA1302 with ff04539. (2002/5/10,2005/08/06)
Features of the cloned cDNA sequence
Description

Length: 10826 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 4775 bp
Genome contig ID gi51511727r_77941977
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
AGCCTTCGTTGACAAATAAAGACTATTTTGTGTTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACAGGTGTCTGGTGGCCTTTGCTTGGAGATAAAGGCTTCCTCTTGCCTGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 11 r 78041977 78175696 19 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 2016 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q6N022 0 100.0 Teneurin-4; Sho...
Homo sapiens
XP_858706 0 98.5 similar to odd ...
Canis lupus fam...
XP_858664 0 98.5 similar to odd ...
Canis lupus fam...
XP_001494247 0 98.5 odz, odd Oz/ten...
Equus caballus
XP_218927 0 97.6 similar to odd ...
Rattus norvegicus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB040888 0 70.2 KIAA1455
AB032953 0 66.5 KIAA1127
AB058677 2.5e-05 27.4 KIAA1781
AB058676 4.6e-05 29.4 KIAA1780
D63483 0.00028 30.9 KIAA0149
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013111 7 33 PF07974 EGF
IPR001258 476 502 PF01436 NHL repeat
IPR001258 594 619 PF01436 NHL repeat
IPR001258 653 688 PF01436 NHL repeat
IPR001258 714 741 PF01436 NHL repeat
IPR001258 783 810 PF01436 NHL repeat
IPR006530 859 896 PF05593 YD repeat
IPR006530 922 960 PF05593 YD repeat
IPR006530 1464 1498 PF05593 YD repeat
IPR006530 1518 1571 PF05593 YD repeat
HMMSmart IPR006210 6 34 SM00181 EGF
IPR006210 46 78 SM00181 EGF
HMMTigr IPR006530 859 900 TIGR01643 YD repeat
IPR006530 923 964 TIGR01643 YD repeat
IPR006530 1134 1174 TIGR01643 YD repeat
IPR006530 1443 1482 TIGR01643 YD repeat
IPR006530 1518 1560 TIGR01643 YD repeat
ProfileScan IPR000742 3 34 PS50026 EGF-like
IPR000742 43 78 PS50026 EGF-like
ScanRegExp IPR013032 22 33 PS00022 EGF-like region
IPR013032 22 33 PS01186 EGF-like region
IPR013032 66 77 PS00022 EGF-like region
IPR013032 66 77 PS01186 EGF-like region
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CATTGCTGAGGTGATAGAGAG
Primer_r CCTTCCCACACTCTGATATTC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 11
Experimental conditions
Panel name unigene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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