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Gene/Protein Characteristic Table for KIAA1206

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Product ID	ORK00767
Accession No	AB033032
Description	plexin B3, transcript variant 1
Clone name	fg04331
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (6145 bp) Predicted protein sequence (1912 aa)
HaloTag ORF Clone	FHC00767
Flexi ORF Clone	FXC00767
Source	Human fetal brain
Rouge ID	mKIAA1206 by Kazusa Mouse cDNA Project

Length: 6145 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis). Integrity of 3' end

Length: 1912 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001627	57	150	PF01403	Semaphorin/CD100 antigen
	IPR002165	476	529	PF01437	Plexin
	IPR002165	790	836	PF01437	Plexin
	IPR002909	838	927	PF01833	Cell surface receptor IPT/TIG
	IPR002909	930	1014	PF01833	Cell surface receptor IPT/TIG
	IPR002909	1018	1147	PF01833	Cell surface receptor IPT/TIG
	IPR002909	1162	1246	PF01833	Cell surface receptor IPT/TIG
	IPR013548	1329	1879	PF08337	Plexin cytoplasmic region
HMMSmart	IPR001627	57	458	SM00630	Semaphorin/CD100 antigen
	IPR003659	476	529	SM00423	Plexin/semaphorin/integrin
	IPR003659	623	685	SM00423	Plexin/semaphorin/integrin
	IPR003659	790	836	SM00423	Plexin/semaphorin/integrin
	IPR002909	837	928	SM00429	Cell surface receptor IPT/TIG
	IPR002909	929	1015	SM00429	Cell surface receptor IPT/TIG
	IPR002909	1017	1148	SM00429	Cell surface receptor IPT/TIG
ProfileScan	IPR001627	34	474	PS51004	Semaphorin/CD100 antigen

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	24	RWPPFGLCLLLLLLSPPPLPLTG	46	SECONDARY	23
	2	1261	VGMGAAVLIAAVLLLTLMYR	1280	PRIMARY	20

RT-PCR-ELISA

Experimental conditions

Chromosome No. 6
Experimental conditions

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