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Gene/Protein Characteristic Table for KIAA0065

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Product ID	ORK00392
Accession No	D31763
Description	zinc finger protein 33A, transcript variant 2
Clone name	ha00946
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of the ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (6041 bp) Predicted protein sequence (848 aa)
HaloTag ORF Clone	FHC00392
Flexi ORF Clone	FXC00392
Source	Myeloblast cell line (KG-1)

Length: 6041 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 848 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR007087	366	389	PD000003	Zinc finger
	IPR007087	394	417	PD000003	Zinc finger
	IPR007087	422	445	PD000003	Zinc finger
	IPR007087	450	473	PD000003	Zinc finger
	IPR007087	478	501	PD000003	Zinc finger
	IPR007087	506	528	PD000003	Zinc finger
	IPR007087	534	557	PD000003	Zinc finger
	IPR007087	562	585	PD000003	Zinc finger
	IPR007087	590	613	PD000003	Zinc finger
	IPR007087	618	641	PD000003	Zinc finger
	IPR007087	646	668	PD000003	Zinc finger
	IPR007087	674	697	PD000003	Zinc finger
	IPR007087	702	725	PD000003	Zinc finger
	IPR007087	730	753	PD000003	Zinc finger
	IPR007087	760	781	PD000003	Zinc finger
	IPR007087	786	808	PD000003	Zinc finger
HMMPfam	IPR001909	50	90	PF01352	KRAB box
	IPR007087	366	388	PF00096	Zinc finger
	IPR007087	394	416	PF00096	Zinc finger
	IPR007087	422	444	PF00096	Zinc finger
	IPR007087	450	472	PF00096	Zinc finger
	IPR007087	478	500	PF00096	Zinc finger
	IPR007087	506	528	PF00096	Zinc finger
	IPR007087	534	556	PF00096	Zinc finger
	IPR007087	562	584	PF00096	Zinc finger
	IPR007087	590	612	PF00096	Zinc finger
	IPR007087	618	640	PF00096	Zinc finger
	IPR007087	646	668	PF00096	Zinc finger
	IPR007087	674	696	PF00096	Zinc finger
	IPR007087	702	724	PF00096	Zinc finger
	IPR007087	730	752	PF00096	Zinc finger
	IPR007087	758	780	PF00096	Zinc finger
	IPR007087	786	808	PF00096	Zinc finger
HMMSmart	IPR001909	50	110	SM00349	KRAB box
	IPR015880	366	388	SM00355	Zinc finger
	IPR015880	394	416	SM00355	Zinc finger
	IPR015880	422	444	SM00355	Zinc finger
	IPR015880	450	472	SM00355	Zinc finger
	IPR015880	478	500	SM00355	Zinc finger
	IPR015880	506	528	SM00355	Zinc finger
	IPR015880	534	556	SM00355	Zinc finger
	IPR015880	562	584	SM00355	Zinc finger
	IPR015880	590	612	SM00355	Zinc finger
	IPR015880	618	640	SM00355	Zinc finger
	IPR015880	646	668	SM00355	Zinc finger
	IPR015880	674	696	SM00355	Zinc finger
	IPR015880	702	724	SM00355	Zinc finger
	IPR015880	730	752	SM00355	Zinc finger
	IPR015880	758	780	SM00355	Zinc finger
	IPR015880	786	808	SM00355	Zinc finger
ProfileScan	IPR001909	50	121	PS50805	KRAB box
	IPR007087	366	393	PS50157	Zinc finger
	IPR007087	394	421	PS50157	Zinc finger
	IPR007087	422	449	PS50157	Zinc finger
	IPR007087	450	477	PS50157	Zinc finger
	IPR007087	478	505	PS50157	Zinc finger
	IPR007087	506	533	PS50157	Zinc finger
	IPR007087	534	561	PS50157	Zinc finger
	IPR007087	562	589	PS50157	Zinc finger
	IPR007087	590	617	PS50157	Zinc finger
	IPR007087	618	645	PS50157	Zinc finger
	IPR007087	646	673	PS50157	Zinc finger
	IPR007087	674	701	PS50157	Zinc finger
	IPR007087	702	729	PS50157	Zinc finger
	IPR007087	730	757	PS50157	Zinc finger
	IPR007087	758	785	PS50157	Zinc finger
	IPR007087	786	813	PS50157	Zinc finger
ScanRegExp	IPR007087	368	388	PS00028	Zinc finger
	IPR007087	396	416	PS00028	Zinc finger
	IPR007087	424	444	PS00028	Zinc finger
	IPR007087	452	472	PS00028	Zinc finger
	IPR007087	480	500	PS00028	Zinc finger
	IPR007087	508	528	PS00028	Zinc finger
	IPR007087	536	556	PS00028	Zinc finger
	IPR007087	564	584	PS00028	Zinc finger
	IPR007087	592	612	PS00028	Zinc finger
	IPR007087	620	640	PS00028	Zinc finger
	IPR007087	648	668	PS00028	Zinc finger
	IPR007087	676	696	PS00028	Zinc finger
	IPR007087	704	724	PS00028	Zinc finger
	IPR007087	732	752	PS00028	Zinc finger
	IPR007087	758	780	PS00028	Zinc finger
	IPR007087	788	808	PS00028	Zinc finger

Northern blot

Experimental conditions

Chromosome No. 17
Experimental conditions

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