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Gene/Protein Characteristic Table for KIAA0743

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Product ID	ORK00123
Accession No	AB018286
Description	neurexin 3, transcript variant 1
Clone name	hk04080
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4149 bp) Predicted protein sequence (1205 aa)
HaloTag ORF Clone	FHC00123
Flexi ORF Clone	FXC00123
Source	Human adult brain
Rouge ID	mKIAA0743 by Kazusa Mouse cDNA Project

Length: 4149 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1205 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR012680	58	184	PF02210	Laminin G
	IPR012680	246	390	PF02210	Laminin G
	IPR006209	418	450	PF00008	EGF-like
	IPR012680	484	614	PF02210	Laminin G
	IPR012680	670	798	PF02210	Laminin G
	IPR006209	824	856	PF00008	EGF-like
	IPR012680	893	1012	PF02210	Laminin G
HMMSmart	IPR001791	50	184	SM00282	Laminin G
	IPR001791	238	390	SM00282	Laminin G
	IPR006210	417	451	SM00181	EGF
	IPR001791	476	614	SM00282	Laminin G
	IPR001791	662	798	SM00282	Laminin G
	IPR006210	823	857	SM00181	EGF
	IPR001791	885	1012	SM00282	Laminin G
	IPR003585	1151	1169	SM00294	Neurexin/syndecan/glycophorin C
ProfileScan	IPR001791	29	211	PS50025	Laminin G
	IPR001791	218	410	PS50025	Laminin G
	IPR000742	414	451	PS50026	EGF-like
	IPR001791	456	628	PS50025	Laminin G
	IPR001791	642	817	PS50025	Laminin G
	IPR000742	820	857	PS50026	EGF-like
	IPR001791	861	1031	PS50025	Laminin G
ScanRegExp	IPR000152	429	440	PS00010	Aspartic acid and asparagine hydroxylation site

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1129	TTGMVVGIVAAAALCILILLYA	1150	PRIMARY	22

RT-PCR-ELISA

Experimental conditions

Chromosome No. 14
Experimental conditions

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