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Gene/Protein Characteristic Table for FLJ00347

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Product ID	ORK05168
Accession No	AK090430
Clone name	sg00014
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (6167 bp) Predicted protein sequence (1752 aa)
Source	Human spleen

Length: 6167 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1752 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002017	38	142	PF00435	Spectrin repeat
	IPR002017	785	887	PF00435	Spectrin repeat
	IPR002017	890	1001	PF00435	Spectrin repeat
	IPR002017	1004	1110	PF00435	Spectrin repeat
	IPR002017	1113	1217	PF00435	Spectrin repeat
	IPR002017	1419	1526	PF00435	Spectrin repeat
HMMSmart	IPR002017	41	141	SM00150	Spectrin repeat
	IPR002017	147	249	SM00150	Spectrin repeat
	IPR002017	464	564	SM00150	Spectrin repeat
	IPR002017	681	781	SM00150	Spectrin repeat
	IPR002017	788	886	SM00150	Spectrin repeat
	IPR002017	893	1000	SM00150	Spectrin repeat
	IPR002017	1007	1109	SM00150	Spectrin repeat
	IPR002017	1116	1216	SM00150	Spectrin repeat
	IPR002017	1422	1525	SM00150	Spectrin repeat
	IPR002017	1532	1636	SM00150	Spectrin repeat
ProfileScan	IPR002017	10	99	PS50083	Spectrin repeat
	IPR002017	223	317	PS50083	Spectrin repeat
	IPR002017	755	805	PS50083	Spectrin repeat
	IPR002017	860	951	PS50083	Spectrin repeat
	IPR002017	974	1075	PS50083	Spectrin repeat
	IPR002017	1083	1154	PS50083	Spectrin repeat
	IPR002017	1408	1490	PS50083	Spectrin repeat
	IPR002017	1499	1599	PS50083	Spectrin repeat

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1702	AALPLQLLLLLLLLLACLLPSS	1723	PRIMARY	22

Experimental conditions

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