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Gene/Protein Characteristic Table for FLJ00126

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Product ID	ORK05087
Accession No	AK074055
Clone name	sh01242
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5261 bp) Predicted protein sequence (878 aa)
Source	Human spleen

Length: 5261 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 878 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR002017	15	126	PF00435	Spectrin repeat
	IPR002017	129	235	PF00435	Spectrin repeat
	IPR002017	238	342	PF00435	Spectrin repeat
	IPR002017	544	651	PF00435	Spectrin repeat
HMMSmart	IPR002017	18	125	SM00150	Spectrin repeat
	IPR002017	132	234	SM00150	Spectrin repeat
	IPR002017	241	341	SM00150	Spectrin repeat
	IPR002017	547	650	SM00150	Spectrin repeat
	IPR002017	657	761	SM00150	Spectrin repeat
ProfileScan	IPR002017	5	76	PS50083	Spectrin repeat
	IPR002017	99	200	PS50083	Spectrin repeat
	IPR002017	208	279	PS50083	Spectrin repeat
	IPR002017	533	615	PS50083	Spectrin repeat
	IPR002017	624	724	PS50083	Spectrin repeat

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	828	AALPLQLLLLLLLLLACLLPSS	849	PRIMARY	22

Experimental conditions

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