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Gene/Protein Characteristic Table for FLJ00300

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Product ID	ORK04093
Accession No	AK090409
Clone name	sh04156
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5609 bp) Predicted protein sequence (283 aa)
Source	Human spleen

Length: 5609 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 283 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMSmart	IPR003599	51	160	SM00409	Immunoglobulin subtype
	IPR003599	164	276	SM00409	Immunoglobulin subtype
ProfileScan	IPR007110	35	156	PS50835	Immunoglobulin-like
	IPR007110	161	283	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1	SCGEISVHCLPWVLFILDLKVES	23	PRIMARY	23
	2	25	MFCPLKLILLPVLLDYSLGLND	46	PRIMARY	22

Experimental conditions

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