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Gene/Protein Characteristic Table for FLJ00154

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Product ID	ORK06748
Accession No	AK074083
Clone name	sh06142
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5442 bp) Predicted protein sequence (1471 aa)
Source	Human spleen
Rouge ID	mFLJ00154 by Kazusa Mouse cDNA Project

Length: 5442 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1471 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR003962	871	880	PR00014	Fibronectin
	IPR003962	989	999	PR00014	Fibronectin
	IPR003962	1214	1232	PR00014	Fibronectin
	IPR003962	1232	1246	PR00014	Fibronectin
HMMPfam	IPR003961	46	135	PF00041	Fibronectin
	IPR003961	147	238	PF00041	Fibronectin
	IPR003961	250	336	PF00041	Fibronectin
	IPR003961	348	438	PF00041	Fibronectin
	IPR003961	451	542	PF00041	Fibronectin
	IPR003961	554	643	PF00041	Fibronectin
	IPR003961	656	742	PF00041	Fibronectin
	IPR003961	755	843	PF00041	Fibronectin
	IPR003961	856	947	PF00041	Fibronectin
	IPR003961	959	1048	PF00041	Fibronectin
	IPR003961	1060	1149	PF00041	Fibronectin
	IPR003961	1161	1248	PF00041	Fibronectin
HMMSmart	IPR003961	46	132	SM00060	Fibronectin
	IPR003961	147	235	SM00060	Fibronectin
	IPR003961	250	332	SM00060	Fibronectin
	IPR003961	348	435	SM00060	Fibronectin
	IPR003961	452	539	SM00060	Fibronectin
	IPR003961	555	640	SM00060	Fibronectin
	IPR003961	656	739	SM00060	Fibronectin
	IPR003961	755	840	SM00060	Fibronectin
	IPR003961	856	944	SM00060	Fibronectin
	IPR003961	960	1045	SM00060	Fibronectin
	IPR003961	1060	1147	SM00060	Fibronectin
	IPR003961	1161	1245	SM00060	Fibronectin

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	1267	WFLLVMALSSLIVILLVVFALVL	1289	PRIMARY	23

Experimental conditions

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