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Gene/Protein Characteristic Table for FLJ00193

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Product ID	ORK05110
Accession No	AK074121
Clone name	sj02629
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4470 bp) Predicted protein sequence (491 aa)
Source	Human spleen
Rouge ID	mFLJ00193 by Kazusa Mouse cDNA Project

Length: 4470 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 491 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002049	42	60	PR00011	Laminin-type EGF-like domain
	IPR002049	84	102	PR00011	Laminin-type EGF-like domain
	IPR002049	170	188	PR00011	Laminin-type EGF-like domain
HMMSmart	IPR006210	29	61	SM00181	Type I EGF
	IPR006210	72	103	SM00181	Type I EGF
	IPR006210	114	146	SM00181	Type I EGF
	IPR006210	157	189	SM00181	Type I EGF
ProfileScan	NULL	17	179	PS50311	NULL
	IPR000694	261	485	PS50099	Proline-rich region
ScanRegExp	IPR006209	49	60	PS00022	EGF-like domain
	IPR006209	49	64	PS01186	EGF-like domain
	IPR006209	91	102	PS00022	EGF-like domain
	IPR006209	91	106	PS01186	EGF-like domain
	IPR006209	134	145	PS00022	EGF-like domain
	IPR006209	134	149	PS01186	EGF-like domain
	IPR006209	177	188	PS00022	EGF-like domain

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	205	AYNSLGAVIGIAVLGSLVVALVA	227	PRIMARY	23

Experimental conditions

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