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Gene/Protein Characteristic Table for FLJ00221

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Product ID	ORK05120
Accession No	AK074148
Clone name	sj06160
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4547 bp) Predicted protein sequence (298 aa)
Source	Human spleen

Length: 4547 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 298 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001841	160	198	PF00097	Zn-finger
HMMSmart	IPR001841	160	198	SM00184	Zn-finger
ProfileScan	IPR001841	160	199	PS50089	Zn-finger
	IPR000694	208	276	PS50099	Proline-rich region

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	5	ACVGVPTALMFLLGILDFLFVSH	27	SECONDARY	23
	2	42	VFGFEYAILMTMVLTIFIKYVLH	64	PRIMARY	23
	3	88	TGFIKVLLYMAFMTIMIKVHTFP	110	PRIMARY	23

Experimental conditions

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