FLJ00340

Product ID	ORK06951
Accession No	AK160379
Clone name	sj08101
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4845 bp) Predicted protein sequence (187 aa)
Source	Human spleen

	N-terminal truncation	Coding interruption
cloned DNA seq	No warning	No warning

Length: 187 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD18722	5.7e-83	100.0	FLJ00340 protei...	Homo sapiens
EAW70927	1.6e-82	100.0	SP100 nuclear a...	Homo sapiens
AAK51202	1.7e-82	100.0	nuclear body pr...	Homo sapiens
CAH18143	1.8e-82	99.5	hypothetical pr...	Homo sapiens
NP_001073860	4.3e-82	99.5	nuclear antigen...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB029036	7.8e-13	31.6	KIAA1113
AB032951	1.3e-05	28.1	KIAA1125
AB029013	0.001	41.3	KIAA1090

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001965	6	50	PF00628	Zn-finger-like
HMMPfam	IPR001487	74	161	PF00439	Bromodomain
HMMSmart	IPR001965	6	48	SM00249	Zn-finger-like
HMMSmart	IPR001487	74	175	SM00297	Bromodomain
ProfileScan	IPR001965	4	50	PS50016	Zn-finger-like
ScanRegExp	IPR001965	7	47	PS01359	Zn-finger-like

Primer_f
Primer_r
PCR conditions	test