HUGE

Gene/Protein Characteristic Table for KIAA1081

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00176
Accession No. :	AB029004
Description :	ELKS/RAB6-interacting/CAST family member 1.
HUGO Gene Name :	ELKS/RAB6-interacting/CAST family member 1 (ERC1)
Clone Name :	bg00262 [Vector Info]
Flexi ORF Clone :	pF1KA1081
Source :	Human adult brain
Note :	We replaced hj07146, former representative clones for KIAA1081 with bg00262. (2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6768 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 3666 bp

Genome contig ID gi89161190f_907208
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ACTGCACTCCAGCCTGGGTGACAGAGACTCCATTT
Flanking genome sequence
(565752 - 565801)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATGGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 f 1007208 1472958 18 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 1003 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAC54107	100.0	ELKS beta [Homo...	Homo sapiens
EAW88940	99.6	RAB6 interactin...	Homo sapiens
XP_868091	99.2	similar to RAB6...	Canis lupus fam...
XP_001151532	99.9	RAB6-interactin...	Pan troglodytes
BAC54109	99.6	ELKS delta [Hom...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB002376	1.7e-90	69.1	KIAA0378
AB023166	1.5e-06	23.5	KIAA0949
AB002334	1.2e-05	22.0	KIAA0336
D13629	2.3e-05	22.1	KIAA0004
AB002371	8.5e-05	20.8	KIAA0373

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTTAACCAAATGTCCCACTCC

Primer_r
: ACTAGACTTGCCGATGGAGGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CTTAACCAAATGTCCCACTCC
Primer_r	: ACTAGACTTGCCGATGGAGGG
PCR product length	: 170 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	3666 bp
Genome contig ID	gi89161190f_907208
PolyA signal sequence (None)	+--------+--------+----*----+---- ACTGCACTCCAGCCTGGGTGACAGAGACTCCATTT
Flanking genome sequence (565752 - 565801)	----+--------+--------+--------+--------+----* AAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATGGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	f	1007208	1472958	18	99.4	Perfect prediction

Gene/Protein Characteristic Table for KIAA1081

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information