HUGE

Gene/Protein Characteristic Table for KIAA1480

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06162
Accession No. :	AB040913
Description :	Neuroligin-3 precursor.
HUGO Gene Name :	neuroligin 3 (NLGN3)
Clone Name :	fj05645 [Vector Info]
Flexi ORF Clone :	pF1KA1480
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3154 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1103 bp

Genome contig ID gi89161218f_70190031
PolyA signal sequence
(AATAAA,-25)
+----*----+----*----+----*----+----
TTGATATAAAAATAAAAAATCCAGTTAGCACTCCC
Flanking genome sequence
(117745 - 117794)
----+----*----+----*----+----*----+----*----+----*
AACCTGCCTCCCTTGCACAGGCCTTGCCCCAACAGACCTCCGAACAGGGT

Features of the protein sequence	Description

Length: 682 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAX05311	100.0	neuroligin 3, i...	Homo sapiens
AAF71232	100.0	neuroligin 3 is...	Homo sapiens
Q9NZ94	100.0	Neuroligin-3; G...	Homo sapiens
BAH13096	99.9	unnamed protein...	Homo sapiens
XP_857450	99.7	similar to neur...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB023168	1e-197	75.7	KIAA0951
AB033086	6.7e-196	77.3	KIAA1260
AB028993	4e-113	71.7	KIAA1070
AB037787	8.2e-112	62.5	KIAA1366

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR000460 304 318 PR01090 Neuroligin

IPR000460 407 428 PR01090 Neuroligin

IPR000460 437 455 PR01090 Neuroligin

IPR000460 536 565 PR01090 Neuroligin

HMMPfam IPR002018 1 458 PF00135 Carboxylesterase

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR000460	304	318	PR01090	Neuroligin
IPR000460	407	428	PR01090	Neuroligin
IPR000460	437	455	PR01090	Neuroligin
IPR000460	536	565	PR01090	Neuroligin
HMMPfam	IPR002018	1	458	PF00135	Carboxylesterase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 542 LSVTIAVGASLLFLNVLAFAAL 563 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	542	LSVTIAVGASLLFLNVLAFAAL	563	PRIMARY	22

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TGAACAACGTACTATGGAAGC

Primer_r
: GACTGTAAAGAAAATGGGGCG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: X

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TGAACAACGTACTATGGAAGC
Primer_r	: GACTGTAAAGAAAATGGGGCG
PCR product length	: 113 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1103 bp
Genome contig ID	gi89161218f_70190031
PolyA signal sequence (AATAAA,-25)	+--------+--------+----*----+---- TTGATATAAAAATAAAAAATCCAGTTAGCACTCCC
Flanking genome sequence (117745 - 117794)	----+--------+--------+--------+--------+----* AACCTGCCTCCCTTGCACAGGCCTTGCCCCAACAGACCTCCGAACAGGGT

Gene/Protein Characteristic Table for KIAA1480

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information