Gene/Protein Characteristic Table for KIAA0013
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Product ID ORK04152
Accession No D87717
Description Rho GTPase activating protein 11A
Clone name ha00450s1
Vector information
The cDNA fragment was inserted at the EcoRV-NotI site of the ...
cDNA sequence DNA sequence (5616 bp)
Predicted protein sequence (1086 aa)
Source Myeloblast cell line (KG-1)
Rouge ID mKIAA0013 by Kazusa Mouse cDNA Project
Note We replaced ha00450, former representative clones for KIAA0013 with ha00450s1. (2008/8/27)
Features of the cloned cDNA sequence
Description

Length: 5616 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning Warning
Integrity of 3' end
Length of 3'UTR 1822 bp
Genome contig ID gi51511731f_28605598
PolyA signal sequence
(AATGAA,-29)
+----*----+----*----+----*----+----
ATCAATAATGAAACATGTCTGTTTTAAAAACTACC
Flanking genome sequence
(2113564 - 2113613)
----+----*----+----*----+----*----+----*----+----*
ACATGTGACTCCTATTTTTGTTAGCTGAAAGCTGCTATACGGAGTATTAC
Features of the protein sequence
Description

Length: 1086 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_510272 0 99.4 Rho GTPase acti...
Pan troglodytes
Q6P4F7 0 100.0 Rho GTPase-acti...
Homo sapiens
XP_001084475 0 93.6 similar to Rho ...
Macaca mulatta
BAG64151 0 100.0 unnamed protein...
Homo sapiens
EAW92260 0 99.7 Rho GTPase acti...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
D50921 5e-09 28.8 KIAA0131
AB014572 8.8e-09 32.0 KIAA0672
AB007925 9.5e-09 32.0 KIAA0456
AB051510 2.6e-08 32.6 KIAA1723
AB037725 6.7e-08 27.4 KIAA1304
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000198 129 275 PF00620 RhoGAP
HMMSmart IPR000198 126 299 SM00324 RhoGAP
ProfileScan IPR000198 112 302 PS50238 RhoGAP
Expression profile
Description

Northern blot
Experimental conditions
Primer_f
Primer_r
PCR conditions test

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name Stanford G3
Primer_f TAGGTTGTAGAGGAAGGAAT
Primer_r ATGCTGTAAGTCTGGTTGCT
PCR product length 141 bp
PCR conditions 95 °C15 sec60 °C60 sec30 cycles
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