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Gene/Protein Characteristic Table for KIAA0234

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Product ID	ORK00039
Accession No	D87072
Description	lysine (K)-specific demethylase 5D, transcript variant 3
Clone name	ha02764
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of the ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5134 bp) Predicted protein sequence (1512 aa)
HaloTag ORF Clone	FHC00039
Flexi ORF Clone	FXC00039
Source	Myeloblast cell line (KG-1)
Rouge ID	mKIAA0234 by Kazusa Mouse cDNA Project

Length: 5134 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis). Integrity of 3' end

Length: 1512 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR003349	45	89	PF02375	Transcription factor jumonji
	IPR001606	106	202	PF01388	AT-rich interaction region
	IPR001965	289	337	PF00628	Zinc finger
	IPR013129	464	580	PF02373	Transcription factor jumonji
	IPR004198	670	723	PF02928	Zinc finger
	IPR013637	734	1060	PF08429	PLU-1-like
	IPR001965	1147	1210	PF00628	Zinc finger
HMMSmart	IPR003349	43	84	SM00545	Transcription factor jumonji
	IPR001965	289	335	SM00249	Zinc finger
	IPR003347	431	597	SM00558	Transcription factor jumonji/aspartyl beta-hydroxylase
	IPR001965	1147	1208	SM00249	Zinc finger
ProfileScan	IPR003349	44	85	PS51183	Transcription factor jumonji
	IPR001965	287	337	PS50016	Zinc finger
	IPR003347	431	597	PS51184	Transcription factor jumonji/aspartyl beta-hydroxylase
ScanRegExp	IPR001965	290	334	PS01359	Zinc finger
	IPR001965	1148	1207	PS01359	Zinc finger

Northern blot

Experimental conditions

Chromosome No. Y
Experimental conditions

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