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Gene/Protein Characteristic Table for KIAA0416

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Product ID	ORK00531
Accession No	AB007876
Description	leucine rich repeat transmembrane neuronal 2
Clone name	hh00236
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5572 bp) Predicted protein sequence (529 aa)
HaloTag ORF Clone	FHC00531
Flexi ORF Clone	FXC00531
Source	Human adult brain
Rouge ID	mKIAA0416 by Kazusa Mouse cDNA Project

Length: 5572 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 529 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001611	148	161	PR00019	Leucine-rich repeat
	IPR001611	193	206	PR00019	Leucine-rich repeat
HMMPfam	IPR001611	99	121	PF00560	Leucine-rich repeat
	IPR001611	123	145	PF00560	Leucine-rich repeat
	IPR001611	147	169	PF00560	Leucine-rich repeat
	IPR001611	171	193	PF00560	Leucine-rich repeat
	IPR001611	195	217	PF00560	Leucine-rich repeat
	IPR001611	219	241	PF00560	Leucine-rich repeat
	IPR001611	267	289	PF00560	Leucine-rich repeat
	IPR001611	291	313	PF00560	Leucine-rich repeat
HMMSmart	IPR003591	97	120	SM00369	Leucine-rich repeat
	IPR003591	121	144	SM00369	Leucine-rich repeat
	IPR003591	145	168	SM00369	Leucine-rich repeat
	IPR003591	169	192	SM00369	Leucine-rich repeat
	IPR003591	193	216	SM00369	Leucine-rich repeat
	IPR003591	217	237	SM00369	Leucine-rich repeat
	IPR003591	241	264	SM00369	Leucine-rich repeat
	IPR003591	265	288	SM00369	Leucine-rich repeat
	IPR003591	289	312	SM00369	Leucine-rich repeat

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	21	PLGAPMLAAIYAMSMVLKMLPAL	43	SECONDARY	23
	2	436	VITGTMALLFSFFFIIFIVFIS	457	PRIMARY	22

RT-PCR

Experimental conditions

Chromosome No. 5
Experimental conditions

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