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Gene/Protein Characteristic Table for KIAA0006

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Product ID	ORK04167
Accession No	D25304
Description	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6, transcript variant 1
Clone name	ha01154
Vector information	The cDNA fragment was inserted at the EcoRV-NotI site of the ... The cDNA fragment was inserted at the EcoRV-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the EcoRV (blunt-end ligation) site without using any linker or adapter. The 3' end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4804 bp) Predicted protein sequence (773 aa)
HaloTag ORF Clone	FHC04167
Flexi ORF Clone	FXC04167
Source	Myeloblast cell line (KG-1)
Rouge ID	mKIAA0006 by Kazusa Mouse cDNA Project

Length: 4804 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis). Integrity of 3' end

Length: 773 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR001452	161	211	PD000066	Src homology-3
FPrintScan	IPR003096	28	43	PR00888	SM22/calponin
	IPR003096	75	90	PR00888	SM22/calponin
	IPR003096	96	110	PR00888	SM22/calponin
	IPR001452	174	189	PR00452	Src homology-3
	IPR001452	191	200	PR00452	Src homology-3
	IPR001452	202	214	PR00452	Src homology-3
HMMPfam	IPR001715	1	108	PF00307	Calponin-like actin-binding
	IPR001452	160	214	PF00018	Src homology-3
	IPR000219	242	417	PF00621	DH
	IPR001849	447	545	PF00169	Pleckstrin-like
HMMSmart	IPR001715	1	103	SM00033	Calponin-like actin-binding
	IPR001452	160	215	SM00326	Src homology-3
	IPR000219	242	417	SM00325	DH
	IPR001849	447	547	SM00233	Pleckstrin-like
ProfileScan	IPR001715	1	107	PS50021	Calponin-like actin-binding
	IPR001452	157	216	PS50002	Src homology-3
	IPR000219	238	418	PS50010	DH
	IPR001849	440	545	PS50003	Pleckstrin-like

Northern blot

Experimental conditions

Chromosome No. X
Experimental conditions

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