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Gene/Protein Characteristic Table for KIAA0407

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Product ID	ORK01666
Accession No	AB007867
Description	plexin B1, transcript variant 1
Clone name	hg01339
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (7308 bp) Predicted protein sequence (2143 aa)
HaloTag ORF Clone	FHC01666
Flexi ORF Clone	FXC01666
Source	Human adult brain
Rouge ID	mKIAA0407 by Kazusa Mouse cDNA Project

Length: 7308 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 2143 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001627	43	470	PF01403	Semaphorin/CD100 antigen
	IPR002165	489	542	PF01437	Plexin
	IPR002165	1029	1076	PF01437	Plexin
	IPR002909	1078	1167	PF01833	Cell surface receptor IPT/TIG
	IPR002909	1170	1256	PF01833	Cell surface receptor IPT/TIG
	IPR002909	1260	1382	PF01833	Cell surface receptor IPT/TIG
	IPR013548	1569	2110	PF08337	Plexin cytoplasmic region
HMMSmart	IPR001627	43	471	SM00630	Semaphorin/CD100 antigen
	IPR003659	489	542	SM00423	Plexin/semaphorin/integrin
	IPR003659	636	686	SM00423	Plexin/semaphorin/integrin
	IPR003659	1029	1076	SM00423	Plexin/semaphorin/integrin
	IPR002909	1077	1168	SM00429	Cell surface receptor IPT/TIG
	IPR002909	1169	1257	SM00429	Cell surface receptor IPT/TIG
	IPR002909	1259	1383	SM00429	Cell surface receptor IPT/TIG
ProfileScan	IPR001627	17	487	PS51004	Semaphorin/CD100 antigen
ScanRegExp	IPR003006	1028	1034	PS00290	Immunoglobulin/major histocompatibility complex motif
	IPR002345	1829	1841	PS00213	Lipocalin

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	7	VTMPALGPALLQALWAGWVLTLQ	29	SECONDARY	23
	2	1494	PVAAQVGLGVGTSLLALGVIIIV	1516	PRIMARY	23

RT-PCR

Experimental conditions

Chromosome No. 3
Experimental conditions

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