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Gene/Protein Characteristic Table for KIAA0566

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Product ID	ORK04208
Accession No	AB011138
Description	ATPase, class V, type 10A
Clone name	hh01910
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (5562 bp) Predicted protein sequence (1163 aa)
Source	Human adult brain
Rouge ID	mKIAA0566 by Kazusa Mouse cDNA Project

Length: 5562 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1163 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001757	89	103	PR00119	ATPase
	IPR001757	693	712	PR00119	ATPase
HMMPfam	IPR013200	687	710	PF08282	HAD superfamily hydrolase-like
HMMTigr	IPR006539	3	973	TIGR01652	Phospholipid-translocating P-type ATPase
	IPR001757	521	570	TIGR01494	ATPase
	IPR001757	662	773	TIGR01494	ATPase
ScanRegExp	IPR001757	91	97	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	24	YSFLTMIIVLQVLIPISLYVSIE	46	PRIMARY	23
	2	772	FFCGFSASTMIDQWYLIFFNLLF	794	PRIMARY	23
	3	836	WFNMADAAFQSLVCFSIPYLAYY	858	SECONDARY	23
	4	865	FTWGTPIVTIALLTFLLHLGIET	887	PRIMARY	23
	5	895	WITCGFSVLLFFTVALIYNASCA	917	SECONDARY	23
	6	930	QALLGDPVFYLTCLMTPVAALLP	952	SECONDARY	23

RT-PCR

Experimental conditions

Chromosome No. 15
Experimental conditions

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