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Gene/Protein Characteristic Table for KIAA0726

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Product ID	ORK04586
Accession No	AB018269
Description	calsyntenin 3
Clone name	hk02972
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328, AmpR). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACG CGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector. This cDNA clone hk02972 has an irregular adapter sequence (GTCGACCCAC GCGTCCGCCC ACGCGTCCG) instead of regular one (GTCGACCCAC GCGTCCG).
cDNA sequence	DNA sequence (4300 bp) Predicted protein sequence (973 aa)
Source	Human adult brain
Rouge ID	mKIAA0726 by Kazusa Mouse cDNA Project

Length: 4300 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 973 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against HUGE database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002126	121	133	PR00205	Cadherin
	IPR002126	141	160	PR00205	Cadherin
	IPR002126	160	173	PR00205	Cadherin
	IPR002126	213	239	PR00205	Cadherin
HMMPfam	IPR002126	50	153	PF00028	Cadherin
	IPR002126	167	256	PF00028	Cadherin
HMMSmart	IPR002126	67	160	SM00112	Cadherin
	IPR002126	183	261	SM00112	Cadherin
ProfileScan	IPR002126	46	162	PS50268	Cadherin
	IPR002126	163	263	PS50268	Cadherin

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	6	MVLGCELSGSTRVVVGVEALLTG	28	SECONDARY	23
	2	864	AATLIIVVCVGFLVLMVVLGLVR	886	PRIMARY	23

RT-PCR-ELISA

Experimental conditions

Chromosome No. 12
Experimental conditions

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