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Gene/Protein Characteristic Table for FLJ00341

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Product ID	ORK01671
Accession No	AK131104
Clone name	sf00005
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (8511 bp) Predicted protein sequence (2760 aa)
Flexi ORF Clone	FXC01671
Source	Human spleen

Length: 8511 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 2760 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR000409	2086	2241	PD007848	Beige/BEACH domain
HMMPfam	IPR000409	2071	2351	PF02138	Beige/BEACH domain
	IPR001680	2499	2536	PF00400	G-protein beta WD-40 repeat
	IPR001680	2550	2587	PF00400	G-protein beta WD-40 repeat
HMMSmart	IPR001680	2449	2494	SM00320	G-protein beta WD-40 repeat
	IPR001680	2497	2536	SM00320	G-protein beta WD-40 repeat
	IPR001680	2548	2587	SM00320	G-protein beta WD-40 repeat
ProfileScan	NULL	1139	1273	PS50319	NULL
	IPR000694	1308	1348	PS50099	Proline-rich region
	IPR000409	2078	2351	PS50197	Beige/BEACH domain
	IPR001680	2461	2596	PS50294	G-protein beta WD-40 repeat
	IPR001680	2504	2537	PS50082	G-protein beta WD-40 repeat
	IPR001680	2555	2596	PS50082	G-protein beta WD-40 repeat

Experimental conditions

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