HUGE

Gene/Protein Characteristic Table for KIAA1888

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04007
Accession No. :	AB067475
Description :	ATP-binding cassette sub-family A member 5.
HUGO Gene Name :
Clone Name :	fk02242 [Vector Info]
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 3112 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 897 bp

Genome contig ID gi51511734r_64654387
PolyA signal sequence
(AATAAA,-31)
+----*----+----*----+----*----+----
CTTGAATAAAATATTTTATTGGGTAAAAAAAAAAT
Flanking genome sequence
(227358 - 227309)
----+----*----+----*----+----*----+----*----+----*
AGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 r 64754386 64781744 20 99.6 Terminal No-hit

Features of the protein sequence	Description

Length: 737 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q8WWZ7	99.9	ATP-binding cas...	Homo sapiens
CAB93535	99.6	ATP-binding cas...	Homo sapiens
AAK30022	99.7	ATP-binding cas...	Homo sapiens
BAB71208	99.3	unnamed protein...	Homo sapiens
XP_511650	98.6	ATP-binding cas...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB020629	1.5e-82	41.9	KIAA0822
AB028985	1.1e-38	28.9	KIAA1062
AB040953	2.1e-05	22.4	KIAA1520

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

BlastProDom IPR003439 528 570 PD000006 ABC transporter related

HMMPfam IPR003439 421 604 PF00005 ABC transporter related

HMMSmart IPR003593 420 607 SM00382 AAA+ ATPase

ProfileScan IPR003439 385 628 PS50893 ABC transporter related

Search method	interpro_ID	From	To	Entry	Definition
BlastProDom	IPR003439	528	570	PD000006	ABC transporter related
HMMPfam	IPR003439	421	604	PF00005	ABC transporter related
HMMSmart	IPR003593	420	607	SM00382	AAA+ ATPase
ProfileScan	IPR003439	385	628	PS50893	ABC transporter related

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 62 VFAAVFNSTMVYSLPILVNIISN 84 SECONDARY 23

2 113 KIELYFQAALLGIIVTAMPPYFA 135 PRIMARY 23

3 163 GQAVVDIPLFFIILILMLGSLLA 185 PRIMARY 23

4 198 LAVVFCLIGYVPSVILFTYIASF 220 PRIMARY 23

5 232 WSFIYSVAALACIAITEITFFMG 254 PRIMARY 23

6 262 HYAFCIIIPIYPLLGCLISFIKI 284 PRIMARY 23

7 302 LSVAVISPYLQCVLWIFLLQ 321 SECONDARY 20

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	62	VFAAVFNSTMVYSLPILVNIISN	84	SECONDARY	23
2	113	KIELYFQAALLGIIVTAMPPYFA	135	PRIMARY	23
3	163	GQAVVDIPLFFIILILMLGSLLA	185	PRIMARY	23
4	198	LAVVFCLIGYVPSVILFTYIASF	220	PRIMARY	23
5	232	WSFIYSVAALACIAITEITFFMG	254	PRIMARY	23
6	262	HYAFCIIIPIYPLLGCLISFIKI	284	PRIMARY	23
7	302	LSVAVISPYLQCVLWIFLLQ	321	SECONDARY	20

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGAGACAAGTGAAGATGATG

Primer_r
: CAAGTGCATGTGTTATTCGAC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	897 bp
Genome contig ID	gi51511734r_64654387
PolyA signal sequence (AATAAA,-31)	+--------+--------+----*----+---- CTTGAATAAAATATTTTATTGGGTAAAAAAAAAAT
Flanking genome sequence (227358 - 227309)	----+--------+--------+--------+--------+----* AGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	r	64754386	64781744	20	99.6	Terminal No-hit

Primer_f	: CAGAGACAAGTGAAGATGATG
Primer_r	: CAAGTGCATGTGTTATTCGAC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1888

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information