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Gene/Protein Characteristic Table for FLJ00170

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Product ID	ORK05101
Accession No	AK074099
Clone name	sh07968s1
Vector information	The cDNA fragment was cloned by use of ZAP-cDNA synthesis ki ... The cDNA fragment was cloned by use of ZAP-cDNA synthesis kit and inserted at the EcoRI-XhoI site of the pNTT104 vector (GenBank Accession No. AB032066, AmpR). The 5' end of the cDNA was repaired and ligated with the EcoRI adapter (5'AATTCGGCAC GAG3') and inserted at the EcoRI site of the vector. The 3' end of the cDNA was inserted at the XhoI site of the vector.
cDNA sequence	DNA sequence (5542 bp) Predicted protein sequence (1310 aa)
Source	Human spleen

Length: 5542 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 1310 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR001611	106	127	PF00560	Leucine-rich repeat
	IPR000203	680	725	PF01825	GPS domain
	IPR000832	752	918	PF00002	GPCR
HMMSmart	IPR003591	54	78	SM00369	Leucine-rich repeat
	IPR003591	79	102	SM00369	Leucine-rich repeat
	IPR003591	103	126	SM00369	Leucine-rich repeat
	IPR003591	127	150	SM00369	Leucine-rich repeat
	IPR000483	162	212	SM00082	Cysteine-rich flanking region
	IPR003599	225	318	SM00409	Immunoglobulin subtype
ProfileScan	IPR001611	57	78	PS51450	Leucine-rich repeat
	IPR001611	81	102	PS51450	Leucine-rich repeat
	IPR001611	105	126	PS51450	Leucine-rich repeat
	IPR001611	129	150	PS51450	Leucine-rich repeat
	IPR007110	232	316	PS50835	Immunoglobulin-like
	IPR001879	299	393	PS50227	GPCR
	IPR000203	679	730	PS50221	GPS domain
	IPR017981	741	916	PS50261	GPCR

Experimental conditions

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