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Gene/Protein Characteristic Table for FLJ00233

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Product ID	ORK05128
Accession No	AK074160
Clone name	sj06856
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4476 bp) Predicted protein sequence (535 aa)
Source	Human spleen

Length: 4476 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 535 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002126	44	73	PR00205	Cadherin
	IPR002126	119	131	PR00205	Cadherin
	IPR002126	133	152	PR00205	Cadherin
	IPR002126	152	165	PR00205	Cadherin
	IPR002126	207	233	PR00205	Cadherin
	IPR002126	355	372	PR00205	Cadherin
HMMPfam	IPR002126	49	145	PF00028	Cadherin
	IPR002126	159	252	PF00028	Cadherin
	IPR002126	266	362	PF00028	Cadherin
	IPR002126	378	469	PF00028	Cadherin
HMMSmart	IPR002126	66	152	SM00112	Cadherin
	IPR002126	176	259	SM00112	Cadherin
	IPR002126	283	371	SM00112	Cadherin
	IPR002126	395	476	SM00112	Cadherin
ProfileScan	IPR002126	5	44	PS50268	Cadherin
	IPR002126	45	154	PS50268	Cadherin
	IPR002126	155	267	PS50268	Cadherin
	IPR002126	262	373	PS50268	Cadherin
	IPR002126	374	482	PS50268	Cadherin
ScanRegExp	IPR002126	32	42	PS00232	Cadherin
	IPR002126	142	152	PS00232	Cadherin
	IPR002126	249	259	PS00232	Cadherin
	IPR002126	361	371	PS00232	Cadherin

Experimental conditions

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