HUGE

Gene/Protein Characteristic Table for KIAA0611

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Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00109
Accession No. :	AB014511
Description :	Probable phospholipid-transporting ATPase IIA.
HUGO Gene Name :	ATPase, class II, type 9A (ATP9A)
Clone Name :	hg00483 [Vector Info]
Flexi ORF Clone :	pF1KA0611
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 7176 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Features of the protein sequence	Description

Length: 912 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW75599	100.0	ATPase, Class I...	Homo sapiens
CAI19203	100.0	ATPase, Class I...	Homo sapiens
XP_514727	98.9	ATPase, Class I...	Pan troglodytes
AAI10593	98.9	ATP9A protein [...	Homo sapiens
BAG61130	88.3	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB023173	7.4e-53	33.4	KIAA0956
AB075819	2.4e-28	28.8	KIAA1939
AB028944	5.8e-28	30.5	KIAA1021
AB018258	2.1e-27	32.6	KIAA0715
AB040920	2.4e-27	28.6	KIAA1487

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR001757 254 268 PR00119 ATPase

IPR001757 534 544 PR00119 ATPase

IPR001757 648 667 PR00119 ATPase

HMMPfam IPR005834 250 671 PF00702 Haloacid dehalogenase-like hydrolase

HMMTigr IPR006539 39 912 TIGR01652 Phospholipid-translocating P-type ATPase

IPR001757 168 275 TIGR01494 ATPase

IPR001757 504 561 TIGR01494 ATPase

IPR001757 621 737 TIGR01494 ATPase

ScanRegExp IPR001757 256 262 PS00154 ATPase

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001757	254	268	PR00119	ATPase
IPR001757	534	544	PR00119	ATPase
IPR001757	648	667	PR00119	ATPase
HMMPfam	IPR005834	250	671	PF00702	Haloacid dehalogenase-like hydrolase
HMMTigr	IPR006539	39	912	TIGR01652	Phospholipid-translocating P-type ATPase
IPR001757	168	275	TIGR01494	ATPase
IPR001757	504	561	TIGR01494	ATPase
IPR001757	621	737	TIGR01494	ATPase
ScanRegExp	IPR001757	256	262	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 61 NQFKYFFNLYFLLLACSQFVPEM 83 SECONDARY 23

2 90 TYWVPLGFVLAVTVIREAVEEIR 112 SECONDARY 23

3 162 DLEVNCLTKILFGALVVVSLVMV 184 PRIMARY 23

4 194 YLQIIRFLLLFSNIIPISLRVNL 216 PRIMARY 23

5 708 SQFVIHRSLCISTMQAVFSSVFY 730 SECONDARY 23

6 742 IIGYSTIYTMFPVFSLVLDKDVK 764 SECONDARY 23

7 787 KTFLIWVLISIYQGSTIMYGALL 809 PRIMARY 23

8 817 HIVAISFTSLILTELLMVALTIQ 839 PRIMARY 23

9 844 LMTVAELLSLACYIASLVFLHEF 866 PRIMARY 23

10 874 TLSFLWKVSVITLVSCLPLYVLK 896 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	61	NQFKYFFNLYFLLLACSQFVPEM	83	SECONDARY	23
2	90	TYWVPLGFVLAVTVIREAVEEIR	112	SECONDARY	23
3	162	DLEVNCLTKILFGALVVVSLVMV	184	PRIMARY	23
4	194	YLQIIRFLLLFSNIIPISLRVNL	216	PRIMARY	23
5	708	SQFVIHRSLCISTMQAVFSSVFY	730	SECONDARY	23
6	742	IIGYSTIYTMFPVFSLVLDKDVK	764	SECONDARY	23
7	787	KTFLIWVLISIYQGSTIMYGALL	809	PRIMARY	23
8	817	HIVAISFTSLILTELLMVALTIQ	839	PRIMARY	23
9	844	LMTVAELLSLACYIASLVFLHEF	866	PRIMARY	23
10	874	TLSFLWKVSVITLVSCLPLYVLK	896	PRIMARY	23

Expression profile	Description

: RT-PCR Description
: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ATATGCTAATGCCTCCCCCAC

Primer_r
: GTAGGATGGAGCAGAAGAATG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 20

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ATATGCTAATGCCTCCCCCAC
Primer_r	: GTAGGATGGAGCAGAAGAATG
PCR product length	: 161 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Gene/Protein Characteristic Table for KIAA0611

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information