HUGE

Gene/Protein Characteristic Table for KIAA0956

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04211
Accession No. :	AB023173
Description :	Probable phospholipid-transporting ATPase IF.
HUGO Gene Name :	ATPase, class VI, type 11B (ATP11B)
Clone Name :	hj05590 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5542 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3521 bp

Genome contig ID gi89161205f_183966820
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
GAAGTTATATTTATCAAATAAAAACTTTCCTATAT
Flanking genome sequence
(155291 - 155340)
----+----*----+----*----+----*----+----*----+----*
AATTAAAAGTGTTCCTTTATTTAAGCATTTTAAGCCTGTCTCTGTTTATC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 f 184066820 184122109 17 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 672 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG65593	100.0	unnamed protein...	Homo sapiens
EAW78344	100.0	ATPase, Class V...	Homo sapiens
Q9Y2G3	100.0	Probable phosph...	Homo sapiens
EAW78345	99.0	ATPase, Class V...	Homo sapiens
BAG52754	99.8	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB028944	2.4e-97	57.9	KIAA1021
AB014511	4.1e-52	33.4	KIAA0611
AB032963	4.5e-45	37.9	KIAA1137
AB075819	2.3e-44	37.7	KIAA1939
AB040920	1.4e-43	36.6	KIAA1487

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR001757 193 203 PR00119 ATPase

IPR001757 314 333 PR00119 ATPase

HMMTigr IPR006539 1 602 TIGR01652 Phospholipid-translocating P-type ATPase

IPR001757 168 218 TIGR01494 ATPase

IPR001757 286 394 TIGR01494 ATPase

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001757	193	203	PR00119	ATPase
IPR001757	314	333	PR00119	ATPase
HMMTigr	IPR006539	1	602	TIGR01652	Phospholipid-translocating P-type ATPase
IPR001757	168	218	TIGR01494	ATPase
IPR001757	286	394	TIGR01494	ATPase

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 25 DEKALVEAAARIGIVFIGNSEET 47 SECONDARY 23

2 405 SVYLTLYNICFTSLPILIYSLLE 427 SECONDARY 23

3 494 WTFGTLVFTVMVITVTVKMALET 516 SECONDARY 23

4 527 TWGSIIFYFVFSLFYGGILWPFL 549 PRIMARY 23

5 560 QLLSSGSAWFAIILMVVTCLFLD 582 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	25	DEKALVEAAARIGIVFIGNSEET	47	SECONDARY	23
2	405	SVYLTLYNICFTSLPILIYSLLE	427	SECONDARY	23
3	494	WTFGTLVFTVMVITVTVKMALET	516	SECONDARY	23
4	527	TWGSIIFYFVFSLFYGGILWPFL	549	PRIMARY	23
5	560	QLLSSGSAWFAIILMVVTCLFLD	582	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GAACTTATCTGATCGCTTGAG

Primer_r
: CACGAGATTTTTCAGAGTAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: UniGene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	3521 bp
Genome contig ID	gi89161205f_183966820
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- GAAGTTATATTTATCAAATAAAAACTTTCCTATAT
Flanking genome sequence (155291 - 155340)	----+--------+--------+--------+--------+----* AATTAAAAGTGTTCCTTTATTTAAGCATTTTAAGCCTGTCTCTGTTTATC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	f	184066820	184122109	17	99.3	Perfect prediction

Primer_f	: GAACTTATCTGATCGCTTGAG
Primer_r	: CACGAGATTTTTCAGAGTAGC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0956

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information